Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1408 and Atu1409 overlap by 1 nucleotidesAtu1409 and Atu1410 are separated by 150 nucleotidesAtu1410 and Atu1411 overlap by 4 nucleotidesAtu1411 and Atu1412 are separated by 1 nucleotides Atu1408: Atu1408 - sorbitol dehydrogenase, at 1,402,611 to 1,403,654 Atu1408 Atu1409: Atu1409 - ureidoglycolate hydrolase, at 1,403,654 to 1,404,142 Atu1409 Atu1410: Atu1410 - ABC transporter, nucleotide binding/ATPase protein, at 1,404,293 to 1,405,015 Atu1410 Atu1411: Atu1411 - ABC transporter, nucleotide binding/ATPase protein, at 1,405,012 to 1,406,784 Atu1411 Atu1412: Atu1412 - ABC transporter, membrane spanning protein, at 1,406,786 to 1,407,820 Atu1412
Group Condition Atu1408 Atu1409 Atu1410 Atu1411 Atu1412
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.3 -0.8 -0.4 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.0 -0.6 -0.2 -0.6
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.5 -0.6 +0.1 -0.2
phage AgroPhage_E04 -0.4 -0.0 -0.6 -0.3 +0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.9 -0.1 -0.2 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 -0.8 +0.0 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.7 +0.4 +0.4 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.2 -0.6 -0.2 +0.3
phage AgroPhage_C10 -0.7 +0.1 +0.5 -0.1 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.5 +0.3 -0.2 +0.2
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.5 -0.1 -0.1 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.2 -0.0 +0.3 +0.3
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.4 -0.3 -0.2 +0.1 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 -0.4 -0.2 +0.3 +0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 +0.6 +0.2 +0.3 -0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.5 +0.1 -0.3 +0.2
carbon source D-Saccharic potassium salt (C) -0.3 +0.4 +0.4 +0.0 +0.2
phage AgroPhage_C04 +0.0 -0.5 +1.0 -0.0 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.2 +0.5 +0.5 -0.0 +0.0
carbon source Rhamnogalacturonan - from potato (C) +0.2 +0.5 +0.3 -0.2 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 -0.4 +0.7 +0.1 +0.6
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.6 +0.3 -0.3 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +0.8 -0.1 +0.2 +0.3
nophagecontrol No phage control +0.2 -0.1 +0.7 +0.1 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.1 +0.7 +0.2 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 +0.5 +0.3 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.0 +0.4 +0.4 +0.2 +0.4
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.1 +0.6 +0.4 -0.0 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.4 +0.5 +0.3 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +0.6 -0.2 +0.3 +0.3
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