Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1406 and Atu1407 are separated by 10 nucleotidesAtu1407 and Atu1408 are separated by 49 nucleotidesAtu1408 and Atu1409 overlap by 1 nucleotidesAtu1409 and Atu1410 are separated by 150 nucleotides Atu1406: Atu1406 - isomerase/lactonizing enzyme, at 1,400,578 to 1,401,780 Atu1406 Atu1407: Atu1407 - gluconate dehydrogenase, at 1,401,791 to 1,402,561 Atu1407 Atu1408: Atu1408 - sorbitol dehydrogenase, at 1,402,611 to 1,403,654 Atu1408 Atu1409: Atu1409 - ureidoglycolate hydrolase, at 1,403,654 to 1,404,142 Atu1409 Atu1410: Atu1410 - ABC transporter, nucleotide binding/ATPase protein, at 1,404,293 to 1,405,015 Atu1410
Group Condition Atu1406 Atu1407 Atu1408 Atu1409 Atu1410
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.2 -0.5 -0.3 -0.8
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.5 +0.2 -0.9 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.6 -0.5 -0.0 -0.6
phage AgroPhage_E04 +0.1 -0.4 -0.4 -0.0 -0.6
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.2 -0.3 -0.5 -0.6
phage AgroPhage_D04 -0.1 -0.4 +0.0 -0.9 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.0 -0.4 -0.4 +0.2 -0.4
phage AgroPhage_H03 +0.1 -0.2 +0.2 -0.3 -0.6
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.3 -0.1 -0.5 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.2 -0.5 -0.7 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.2 +0.1 -0.2 -0.8
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.0 +0.5 -0.5 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.1 +0.1 -0.3 -0.6
phage AgroPhage_C10 +0.0 -0.3 -0.7 +0.1 +0.5
stress R2A with Vancomycin 0.009 mM -0.4 +0.1 +0.1 +0.4 -0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.1 +0.3 -0.5 +0.3
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.2 +0.3 +0.2 -0.4
phage AgroPhage_E10 -0.3 -0.4 -0.1 +0.4 +0.4
stress Chloramphenicol 12.5 ug/mL -0.2 +0.2 +0.1 +0.6 -0.4
phage AgroPhage_C04 +0.2 -0.4 +0.0 -0.5 +1.0
stress R2A with Tetracycline 0.002 mM -0.2 -0.2 +0.2 +0.3 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.1 -0.2 -0.2 +0.5 +0.5
carbon source D-Saccharic potassium salt (C) +0.2 -0.1 -0.3 +0.4 +0.4
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.2 +0.4 +0.3 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.4 +0.1 +0.1 +0.8
carbon source Rhamnogalacturonan - from potato (C) -0.0 -0.3 +0.1 +0.5 +0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.6 -0.2 +0.3 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +0.1 -0.1 -0.0 +0.8
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.2 +0.3 +0.6 +0.3
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.1 +0.3 +0.2 +0.6 +0.4
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