Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1404 and Atu1405 are separated by 123 nucleotidesAtu1405 and Atu1406 are separated by 160 nucleotidesAtu1406 and Atu1407 are separated by 10 nucleotidesAtu1407 and Atu1408 are separated by 49 nucleotides Atu1404: Atu1404 - ABC transporter, substrate binding protein (sugar), at 1,398,321 to 1,399,538 Atu1404 Atu1405: Atu1405 - transcriptional regulator, GntR family, at 1,399,662 to 1,400,417 Atu1405 Atu1406: Atu1406 - isomerase/lactonizing enzyme, at 1,400,578 to 1,401,780 Atu1406 Atu1407: Atu1407 - gluconate dehydrogenase, at 1,401,791 to 1,402,561 Atu1407 Atu1408: Atu1408 - sorbitol dehydrogenase, at 1,402,611 to 1,403,654 Atu1408
Group Condition Atu1404 Atu1405 Atu1406 Atu1407 Atu1408
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -1.8 -0.2 -0.5 +0.2
phage AgroPhage_D04 -0.5 -1.2 -0.1 -0.4 +0.0
in planta Bethi_Library_OD0.01 -0.0 -0.8 -0.1 -0.0 -0.5
phage AgroPhage_E04 -0.3 -0.4 +0.1 -0.4 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.9 +0.1 -0.1 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -0.5 -0.0 -0.3 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -0.4 +0.1 -0.6 -0.5
in planta Bethi_Library_OD0.05 -0.2 -0.4 -0.3 +0.0 -0.5
stress R2A with Kanamycin sulfate 0.02 mM +0.0 -1.2 -0.1 +0.1 -0.2
pH R2A pH 5.5 -0.1 -0.4 -0.3 -0.2 -0.4
carbon source Asolectin from soybean (C) -0.1 -1.0 +0.0 -0.2 -0.1
phage AgroPhage_C10 -0.4 +0.2 +0.0 -0.3 -0.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.4 +0.1 -0.4 -0.3
stress R2A with tungstate 375 mM -0.5 -0.4 +0.2 -0.2 -0.2
pH R2A pH 5.5 +0.1 -1.0 -0.1 -0.2 +0.1
stress R2A with Vancomycin 0.009 mM +0.0 -0.8 -0.4 +0.1 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 +0.3 -0.1 +0.2 -0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -1.0 +0.1 +0.1 -0.1
phage AgroPhage_C04 +0.3 -0.7 +0.2 -0.4 +0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.4 +0.4 +0.0 -0.4
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.7 +0.2 +0.6 -0.2
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.2 -1.0 +0.1 +0.3 +0.2
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.8 -0.1 -0.2 -0.2
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.1 -0.3 +0.0 +0.5
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.5 -0.4 +0.2 +0.4
carbon source L-ascorbate (C) +0.0 +1.3 -0.0 -0.1 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +1.3 -0.0 +0.3 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +1.3 +0.4 -0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.6 +0.5 +0.1 -0.1
carbon source L-ascorbate (C) -0.1 +1.5 +0.1 +0.1 +0.1
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