Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1389 and Atu1390 overlap by 4 nucleotidesAtu1390 and Atu1391 overlap by 23 nucleotidesAtu1391 and Atu1392 are separated by 78 nucleotidesAtu1392 and Atu1393 are separated by 306 nucleotides Atu1389: Atu1389 - ABC transporter, membrane spanning protein, at 1,383,069 to 1,383,740 Atu1389 Atu1390: Atu1390 - ABC transporter, membrane spanning protein, at 1,383,737 to 1,384,396 Atu1390 Atu1391: Atu1391 - ABC transporter, nucleotide binding/ATPase protein, at 1,384,374 to 1,385,108 Atu1391 Atu1392: Atu1392 - citrate synthase, at 1,385,187 to 1,386,476 Atu1392 Atu1393: Atu1393 - hypothetical protein, at 1,386,783 to 1,389,212 Atu1393
Group Condition Atu1389 Atu1390 Atu1391 Atu1392 Atu1393
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.2 -0.2 -0.4 N.D. -0.0
stress R2A with tungstate 375 mM -0.7 +0.0 -0.1 N.D. -0.3
phage AgroPhage_C04 -1.0 -0.1 -0.0 N.D. +0.0
no phage P2L5 -0.3 -0.3 -0.2 N.D. -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.3 -0.2 N.D. +0.1
no phage P4L5 -0.6 -0.0 -0.1 N.D. +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.5 -0.1 N.D. +0.1
nitrogen source DL-2-Aminobutyric (N) -0.1 +0.3 -0.4 N.D. +0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.2 -0.3 N.D. -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 -0.3 +0.1 N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -0.1 +0.5 N.D. +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.2 -0.5 +0.1 N.D. +0.3
phage AgroPhage_E04 +0.4 +0.1 -0.1 N.D. -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.9 +0.6 N.D. +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.4 +0.3 N.D. -0.2
phage AgroPhage_F03 +0.6 -0.2 -0.1 N.D. -0.1
phage AgroPhage_E10 +0.8 -0.7 +0.2 N.D. -0.0
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.7 -0.1 -0.1 N.D. -0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.2 -0.2 N.D. -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.5 -0.4 +0.0 N.D. +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 -0.3 +0.2 N.D. -0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 -0.2 +0.3 N.D. +0.0
stress Chloramphenicol 12.5 ug/mL +0.8 +0.1 -0.1 N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -0.2 +0.4 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.2 -0.0 -0.3 N.D. -0.0
phage AgroPhage_F10 +0.2 +0.2 +0.3 N.D. +0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.7 +0.2 N.D. -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 +0.5 +0.2 +0.2 N.D. +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.6 +0.1 +0.3 N.D. +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.3 -0.2 +0.5 N.D. +0.1
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