Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1386 and Atu1387 are separated by 192 nucleotidesAtu1387 and Atu1388 are separated by 6 nucleotidesAtu1388 and Atu1389 are separated by 80 nucleotidesAtu1389 and Atu1390 overlap by 4 nucleotides Atu1386: Atu1386 - lipid A-disaccharide synthase, at 1,380,109 to 1,381,293 Atu1386 Atu1387: Atu1387 - transcriptional regulator, GntR family, at 1,381,486 to 1,382,196 Atu1387 Atu1388: Atu1388 - ABC transporter, substrate binding protein (amino acid), at 1,382,203 to 1,382,988 Atu1388 Atu1389: Atu1389 - ABC transporter, membrane spanning protein, at 1,383,069 to 1,383,740 Atu1389 Atu1390: Atu1390 - ABC transporter, membrane spanning protein, at 1,383,737 to 1,384,396 Atu1390
Group Condition Atu1386 Atu1387 Atu1388 Atu1389 Atu1390
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.7 -0.3 -1.2 -0.2
phage AgroPhage_C04 N.D. -0.2 +0.1 -1.0 -0.1
in planta Bethi_Library_OD0.01 N.D. -1.0 -0.1 +0.2 -0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -1.4 +0.4 +0.0 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.8 -0.5 +0.2 +0.3
stress R2A with Ferric chloride 0.1 mM N.D. -0.7 +0.2 +0.1 -0.3
in planta Bethi_Library_OD1.0 N.D. -0.7 +0.2 +0.2 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.8 -0.1 +0.6 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 +0.1 +0.4 -0.9
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.7 -0.3 +0.6 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.9 +0.2 +0.3 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.5 +0.2 -0.4 -0.3
phage AgroPhage_E10 N.D. +0.3 -0.2 +0.8 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.9 -0.5 +0.0 +0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days N.D. +0.5 +0.3 +0.2 -0.5
carbon source D-Saccharic potassium salt (C) N.D. +0.3 -0.5 +0.4 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +1.1 +0.1 -0.2 -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.5 -0.2 +0.5 -0.2
phage AgroPhage_E04 N.D. +0.4 -0.4 +0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.5 +0.2 +1.2 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 N.D. +0.9 -0.2 +0.2 -0.1
carbon source D-Sorbitol (C) N.D. +1.1 -0.0 -0.1 +0.2
carbon source D-(+)-melezitose (C) N.D. +0.9 +0.3 +0.1 +0.0
nophagecontrol No phage control N.D. +0.8 +0.3 +0.1 +0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +1.6 -0.1 -0.3 +0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +1.1 +0.1 +0.3 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +1.9 +0.0 -0.3 +0.1
stress Chloramphenicol 12.5 ug/mL N.D. +0.4 +0.4 +0.8 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.7 +0.0 +1.3 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +1.1 +0.8 -0.1 +0.1
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