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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu1349 and Atu1350 are separated by 129 nucleotides
Atu1350 and Atu1351 are separated by 306 nucleotides
Atu1351 and Atu1352 are separated by 179 nucleotides
Atu1352 and Atu1353 are separated by 79 nucleotides
Atu1349: Atu1349 - hypothetical protein, at 1,344,809 to 1,345,177
Atu1349
Atu1350: Atu1350 - ferrodoxin, at 1,345,307 to 1,345,627
Atu1350
Atu1351: Atu1351 - hypothetical protein, at 1,345,934 to 1,346,560
Atu1351
Atu1352: Atu1352 - dihydropteroate synthase, at 1,346,740 to 1,347,525
Atu1352
Atu1353: Atu1353 - dihydroneopterin aldolase, at 1,347,605 to 1,347,970
Atu1353
Group
Condition
Atu1349
Atu1350
Atu1351
Atu1352
Atu1353
stress
R2A with Vancomycin 0.009 mM
-0.2
N.D.
-1.8
N.D.
N.D.
stress
R2A with Vancomycin 0.009 mM
-0.3
N.D.
-1.7
N.D.
N.D.
stress
R2A with Ceftazidime 4 mM
+0.1
N.D.
-1.6
N.D.
N.D.
stress
R2A with Ticarcillin 0.01 mM
-0.0
N.D.
-1.2
N.D.
N.D.
stress
R2A with Ceftazidime 4 mM
+0.2
N.D.
-1.4
N.D.
N.D.
stress
R2A with Ticarcillin 0.01 mM
-0.2
N.D.
-1.0
N.D.
N.D.
in planta
Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.4
N.D.
-0.7
N.D.
N.D.
in planta
Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.5
N.D.
-0.5
N.D.
N.D.
in planta
Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.0
N.D.
-1.0
N.D.
N.D.
no phage
P4L5
-0.0
N.D.
-0.9
N.D.
N.D.
in planta
Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.3
N.D.
-0.7
N.D.
N.D.
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.5
N.D.
-0.4
N.D.
N.D.
in planta
Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.5
N.D.
-1.2
N.D.
N.D.
in planta
Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.1
N.D.
-0.8
N.D.
N.D.
stress
methyl jasmonate 5 mM
+0.2
N.D.
-0.8
N.D.
N.D.
in planta
Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
+0.2
N.D.
-0.8
N.D.
N.D.
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.3
N.D.
-0.8
N.D.
N.D.
stress
methyl jasmonate 5 mM
+0.3
N.D.
-0.7
N.D.
N.D.
in planta
Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.4
N.D.
-0.7
N.D.
N.D.
in planta
Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.4
N.D.
+0.6
N.D.
N.D.
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.6
N.D.
-0.4
N.D.
N.D.
in planta
Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.8
N.D.
-0.5
N.D.
N.D.
in planta
Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.9
N.D.
-0.5
N.D.
N.D.
in planta
Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.8
N.D.
-0.3
N.D.
N.D.
phage
AgroPhage_F04
+0.3
N.D.
+0.7
N.D.
N.D.
in planta
Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.6
N.D.
+0.5
N.D.
N.D.
phage
AgroPhage_C10
+0.4
N.D.
+0.7
N.D.
N.D.
nitrogen source
DL-2-Aminobutyric (N)
+1.8
N.D.
-0.6
N.D.
N.D.
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.8
N.D.
+0.4
N.D.
N.D.
in planta
Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.5
N.D.
+1.7
N.D.
N.D.
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