Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1344 and Atu1345 are separated by 19 nucleotidesAtu1345 and Atu1346 are separated by 304 nucleotidesAtu1346 and Atu1347 are separated by 221 nucleotidesAtu1347 and Atu1348 are separated by 92 nucleotides Atu1344: Atu1344 - hypothetical protein, at 1,333,206 to 1,333,706 Atu1344 Atu1345: Atu1345 - hypothetical protein, at 1,333,726 to 1,334,499 Atu1345 Atu1346: Atu1346 - phenazine antibiotic biosynthesis related protein, at 1,334,804 to 1,335,721 Atu1346 Atu1347: Atu1347 - Tetracycline resistance protein, tetM/tetO subfamily, at 1,335,943 to 1,337,892 Atu1347 Atu1348: Atu1348 - hypothetical protein, at 1,337,985 to 1,344,332 Atu1348
Group Condition Atu1344 Atu1345 Atu1346 Atu1347 Atu1348
phage AgroPhage_C04 -3.7 N.D. -0.5 -0.5 N.D.
nitrogen source DL-2-Aminobutyric (N) -2.7 N.D. -0.7 +0.2 N.D.
phage AgroPhage_D10 -2.6 N.D. -0.2 -0.3 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -2.9 N.D. +0.5 -0.1 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -2.1 N.D. +0.0 -0.3 N.D.
stress R2A with Tetracycline 0.002 mM -1.5 N.D. -0.2 -0.5 N.D.
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.7 N.D. -0.3 +0.1 N.D.
stress R2A with Spectinomycin 0.002 mM -1.2 N.D. -0.4 -0.0 N.D.
phage AgroPhage_E10 -1.6 N.D. -0.1 +0.2 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.8 N.D. +0.5 -0.2 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.2 N.D. +0.1 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.1 N.D. -0.3 -0.0 N.D.
stress R2A with Vancomycin 0.009 mM -0.9 N.D. -0.6 +0.1 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.1 N.D. -0.4 +0.1 N.D.
stress R2A with Nickel (II) chloride 0.05 mM -1.3 N.D. -0.1 +0.1 N.D.
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.4 N.D. +0.2 -0.1 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.4 N.D. +0.6 -0.3 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.4 N.D. +0.4 +0.0 N.D.
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 N.D. -0.9 -0.2 N.D.
phage AgroPhage_D04 -1.1 N.D. +0.2 +0.2 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 N.D. +0.8 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 N.D. +0.9 -0.1 N.D.
phage AgroPhage_E04 +1.0 N.D. -0.2 -0.3 N.D.
stress Chloramphenicol 12.5 ug/mL +0.7 N.D. +0.4 -0.3 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.2 N.D. +0.0 -0.3 N.D.
phage phage 100.3 +1.1 N.D. +0.3 +0.1 N.D.
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 N.D. +0.8 +0.1 N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.9 N.D. +0.9 -0.3 N.D.
phage phage 100.2 +1.2 N.D. +0.2 +0.1 N.D.
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.7 N.D. +0.3 +0.0 N.D.
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