Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1340 and Atu1341 are separated by 316 nucleotidesAtu1341 and Atu1342 are separated by 201 nucleotidesAtu1342 and Atu1343 are separated by 74 nucleotidesAtu1343 and Atu1344 are separated by 27 nucleotides Atu1340: Atu1340 - N-acetylmuramoyl-L-alanine amidase, at 1,327,380 to 1,328,639 Atu1340 Atu1341: Atu1341 - penicillin-binding protein 1a, at 1,328,956 to 1,331,403 Atu1341 Atu1342: Atu1342 - peptide chain release factor 2, at 1,331,605 to 1,332,633 Atu1342 Atu1343: Atu1343 - hypothetical protein, at 1,332,708 to 1,333,178 Atu1343 Atu1344: Atu1344 - hypothetical protein, at 1,333,206 to 1,333,706 Atu1344
Group Condition Atu1340 Atu1341 Atu1342 Atu1343 Atu1344
phage AgroPhage_C04 N.D. N.D. N.D. +0.1 -3.7
nitrogen source DL-2-Aminobutyric (N) N.D. N.D. N.D. -0.7 -2.7
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. +0.3 -2.9
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.3 -2.1
phage AgroPhage_D10 N.D. N.D. N.D. +0.3 -2.6
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -1.1 -1.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. N.D. -0.6 -1.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.2 -1.7
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.3 -1.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. +0.1 -1.8
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.1 -1.3
stress R2A with Tetracycline 0.002 mM N.D. N.D. N.D. -0.0 -1.5
phage AgroPhage_D04 N.D. N.D. N.D. -0.3 -1.1
phage AgroPhage_E10 N.D. N.D. N.D. +0.4 -1.6
stress R2A with Nickel (II) chloride 0.05 mM N.D. N.D. N.D. +0.1 -1.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. +0.1 -1.2
stress R2A with Spectinomycin 0.002 mM N.D. N.D. N.D. +0.1 -1.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +0.7 -1.2
lb LB N.D. N.D. N.D. +0.4 -0.9
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. +0.5 -0.8
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. +0.8 -0.7
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.4 +0.9
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. +1.6 -0.7
phage AgroPhage_H03 N.D. N.D. N.D. -0.1 +1.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. N.D. -0.2 +1.2
phage AgroPhage_E04 N.D. N.D. N.D. +0.3 +1.0
phage phage 100.3 N.D. N.D. N.D. +0.3 +1.1
nophagecontrol No phage control N.D. N.D. N.D. +0.3 +1.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. +0.1 +1.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +0.3 +3.2
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