Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1337 and Atu1338 are separated by 127 nucleotidesAtu1338 and Atu1339 are separated by 113 nucleotidesAtu1339 and Atu8016 are separated by 259 nucleotidesAtu8016 and Atu1340 are separated by 245 nucleotides Atu1337: Atu1337 - hypothetical protein, at 1,322,490 to 1,322,855 Atu1337 Atu1338: Atu1338 - 3-oxoacyl-(acyl carrier protein) reductase, at 1,322,983 to 1,323,687 Atu1338 Atu1339: Atu1339 - ribonuclease E, at 1,323,801 to 1,326,734 Atu1339 Atu8016: Atu8016 - hypothetical protein, at 1,326,994 to 1,327,134 Atu8016 Atu1340: Atu1340 - N-acetylmuramoyl-L-alanine amidase, at 1,327,380 to 1,328,639 Atu1340
Group Condition Atu1337 Atu1338 Atu1339 Atu8016 Atu1340
carbon source L-ascorbate (C) -0.1 -0.1 -3.5 N.D. N.D.
carbon source D-Saccharic potassium salt (C) -0.6 -0.6 -2.0 N.D. N.D.
carbon source L-ascorbate (C) +0.1 -0.0 -3.2 N.D. N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.3 -3.0 N.D. N.D.
carbon source L-Galactose (C) +0.0 -0.3 -2.0 N.D. N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.0 -0.0 -1.2 N.D. N.D.
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.1 -0.5 -1.4 N.D. N.D.
carbon source L-Sorbose (C) -0.1 -0.3 -1.6 N.D. N.D.
phage Phage 100.3 + bacteria -0.0 -0.3 -1.5 N.D. N.D.
phage phage 99.2 -0.6 +0.0 -1.3 N.D. N.D.
phage Phage 100.1 + bacteria +0.1 -0.1 -1.8 N.D. N.D.
phage Phage 100.2 + bactiera -0.1 +0.1 -1.8 N.D. N.D.
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.4 -0.3 -1.1 N.D. N.D.
carbon source Ethyl benzoate (C) +0.0 +0.2 -1.9 N.D. N.D.
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.4 -1.2 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 -0.4 -1.4 N.D. N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.3 -0.2 -1.4 N.D. N.D.
stress Hygromycin B 12.5 ug/mL +0.3 -0.0 -1.5 N.D. N.D.
carbon source 4-Aminobutyric (C) +0.2 +0.2 -1.5 N.D. N.D.
carbon source DL-glyceraldehyde (C) -0.1 +0.4 -1.5 N.D. N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.4 -1.6 N.D. N.D.
carbon source Ethyl benzoate (C) +0.3 +0.2 -1.5 N.D. N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.5 +0.7 -0.8 N.D. N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.7 -0.5 +0.8 N.D. N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.5 -1.0 N.D. N.D.
stress Chloramphenicol 12.5 ug/mL -0.2 -0.7 +1.6 N.D. N.D.
phage AgroPhage_H04 -0.6 +0.5 +1.0 N.D. N.D.
stress R2A with Vancomycin 0.009 mM -0.6 +0.5 +1.5 N.D. N.D.
stress R2A with m-arsenite 0.8 mM -0.2 -0.2 +4.0 N.D. N.D.
stress R2A with m-arsenite 0.8 mM +0.1 -0.0 +3.7 N.D. N.D.
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