Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1328 and Atu1329 are separated by 13 nucleotidesAtu1329 and Atu1330 are separated by 6 nucleotidesAtu1330 and Atu1331 are separated by 12 nucleotidesAtu1331 and Atu1332 are separated by 25 nucleotides Atu1328: Atu1328 - hypothetical protein, at 1,315,775 to 1,316,212 Atu1328 Atu1329: Atu1329 - leucyl/phenylalanyl-tRNA-protein transferase, at 1,316,226 to 1,316,840 Atu1329 Atu1330: Atu1330 - acetyl-CoA carboxylase, biotin carboxylase, at 1,316,847 to 1,318,193 Atu1330 Atu1331: Atu1331 - acetyl-CoA carboxylase, biotin carboxyl carrier protein, at 1,318,206 to 1,318,694 Atu1331 Atu1332: Atu1332 - 3-dehydroquinate dehydratase, at 1,318,720 to 1,319,157 Atu1332
Group Condition Atu1328 Atu1329 Atu1330 Atu1331 Atu1332
phage AgroPhage_D10 N.D. -1.2 N.D. N.D. N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.8 N.D. N.D. N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.7 N.D. N.D. N.D.
phage AgroPhage_F04 N.D. -0.7 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.7 N.D. N.D. N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.7 N.D. N.D. N.D.
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.6 N.D. N.D. N.D.
stress R2A with Tetracycline 0.002 mM N.D. -0.6 N.D. N.D. N.D.
carbon source D-Saccharic potassium salt (C) N.D. -0.6 N.D. N.D. N.D.
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. -0.6 N.D. N.D. N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. -0.5 N.D. N.D. N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 N.D. N.D. N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.5 N.D. N.D. N.D.
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. -0.5 N.D. N.D. N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 N.D. N.D. N.D.
stress R2A with Nitrofurantoin 0.4 mg/mL N.D. -0.5 N.D. N.D. N.D.
phage Phage 99.2 + bacteria N.D. -0.4 N.D. N.D. N.D.
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.4 N.D. N.D. N.D.
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.4 N.D. N.D. N.D.
carbon source D-Fructose (C) N.D. +0.4 N.D. N.D. N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.5 N.D. N.D. N.D.
lb LB N.D. +0.5 N.D. N.D. N.D.
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.5 N.D. N.D. N.D.
carbon source Dextrin from potato starch (C) N.D. +0.5 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.6 N.D. N.D. N.D.
nitrogen source L-Ornithine (N) N.D. +0.6 N.D. N.D. N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.6 N.D. N.D. N.D.
nitrogen source L-Ornithine (N) N.D. +0.7 N.D. N.D. N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.7 N.D. N.D. N.D.
nitrogen source DL-2-Aminobutyric (N) N.D. +2.5 N.D. N.D. N.D.
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