Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu8155 and Atu1316 overlap by 49 nucleotidesAtu1316 and Atu1317 are separated by 5 nucleotidesAtu1317 and Atu1318 are separated by 126 nucleotidesAtu1318 and Atu1319 are separated by 56 nucleotides Atu8155: Atu8155 - hypothetical protein, at 1,306,585 to 1,306,902 Atu8155 Atu1316: Atu1316 - hypothetical protein, at 1,306,854 to 1,307,333 Atu1316 Atu1317: Atu1317 - metal dependent hydrolase, at 1,307,339 to 1,308,439 Atu1317 Atu1318: Atu1318 - glutamyl-tRNA-Gln-amidotransferase chain C, at 1,308,566 to 1,308,853 Atu1318 Atu1319: Atu1319 - glutamyl-tRNA amidotransferase subunit A, at 1,308,910 to 1,310,391 Atu1319
Group Condition Atu8155 Atu1316 Atu1317 Atu1318 Atu1319
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.8 N.D. -0.2 N.D. N.D.
phage AgroPhage_F04 -1.2 N.D. -0.3 N.D. N.D.
phage AgroPhage_F10 -1.2 N.D. -0.2 N.D. N.D.
phage AgroPhage_D04 -0.8 N.D. -0.5 N.D. N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 N.D. -0.8 N.D. N.D.
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 N.D. -0.2 N.D. N.D.
nitrogen source DL-2-Aminobutyric (N) -0.2 N.D. -0.6 N.D. N.D.
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.0 N.D. +0.2 N.D. N.D.
carbon source D-Saccharic potassium salt (C) -0.5 N.D. -0.3 N.D. N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 N.D. +0.3 N.D. N.D.
phage AgroPhage_E04 -0.9 N.D. +0.5 N.D. N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 N.D. +0.4 N.D. N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 N.D. -0.5 N.D. N.D.
phage AgroPhage_H04 -0.5 N.D. +0.3 N.D. N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 N.D. +0.5 N.D. N.D.
phage Phage 99.3 + bacteria +0.5 N.D. -0.3 N.D. N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 N.D. -0.3 N.D. N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.9 N.D. -0.1 N.D. N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.8 N.D. +0.0 N.D. N.D.
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 N.D. +0.5 N.D. N.D.
stress R2A with Carbenicillin 150 mM +0.6 N.D. +0.2 N.D. N.D.
stress R2A with sodium fluoride 0.2 mM +0.7 N.D. +0.1 N.D. N.D.
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 N.D. +0.1 N.D. N.D.
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 N.D. +0.0 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 N.D. +0.2 N.D. N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.0 N.D. -0.0 N.D. N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 N.D. +0.3 N.D. N.D.
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 N.D. +0.5 N.D. N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.1 N.D. +0.1 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 N.D. +0.5 N.D. N.D.
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