Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1304 and Atu1305 are separated by 445 nucleotidesAtu1305 and Atu1306 are separated by 21 nucleotidesAtu1306 and Atu1307 are separated by 57 nucleotidesAtu1307 and Atu1308 overlap by 4 nucleotides Atu1304: Atu1304 - DNA topoisomerase I, at 1,294,043 to 1,296,721 Atu1304 Atu1305: Atu1305 - DNA processing chain A, at 1,297,167 to 1,298,309 Atu1305 Atu1306: Atu1306 - hypothetical protein, at 1,298,331 to 1,298,939 Atu1306 Atu1307: Atu1307 - dihydroorotase, at 1,298,997 to 1,300,289 Atu1307 Atu1308: Atu1308 - aspartate carbamoyl transferase catalytic subunit, at 1,300,286 to 1,301,227 Atu1308
Group Condition Atu1304 Atu1305 Atu1306 Atu1307 Atu1308
carbon source NAG (C) N.D. +0.2 N.D. -7.9 -8.0
carbon source D-Quinic (C) N.D. +0.0 N.D. -7.2 -8.3
carbon source D-Trehalose (C) N.D. +0.0 N.D. -6.9 -8.4
carbon source D-Maltose (C) N.D. +0.2 N.D. -7.5 -7.3
carbon source Cellotetraose (C) N.D. +0.2 N.D. -7.5 -7.3
carbon source Xylobiose (C) N.D. -0.1 N.D. -7.3 -7.1
carbon source Betanin (C) N.D. +0.1 N.D. -8.1 -6.5
carbon source D-Mannose (C) N.D. +0.0 N.D. -6.7 -7.6
carbon source Sucrose (C) N.D. +0.2 N.D. -6.5 -7.6
carbon source Cellotetraose (C) N.D. +0.2 N.D. -7.4 -6.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 N.D. +0.1 N.D. -7.1 -6.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 N.D. +0.1 N.D. -7.4 -6.5
carbon source D-Trehalose (C) N.D. +0.1 N.D. -7.2 -6.6
carbon source m-Inositol (C) N.D. -0.0 N.D. -7.3 -6.4
carbon source Sucrose (C) N.D. +0.1 N.D. -6.6 -7.2
carbon source Beta-Lactose (C) N.D. +0.1 N.D. -6.7 -7.0
carbon source D-Galactose (C) N.D. -0.0 N.D. -7.5 -6.0
carbon source Sucrose (C) N.D. +0.0 N.D. -6.1 -7.3
carbon source pyruvate (C) N.D. -0.1 N.D. -5.6 -7.7
carbon source Gentibiose (C) N.D. -0.0 N.D. -7.4 -6.0
carbon source 2-Keto-D-gluconic hemicalcium salt (C) N.D. +0.1 N.D. -5.9 -7.5
carbon source Protocatechuic Acid (C) N.D. -0.0 N.D. -6.8 -6.5
carbon source m-Inositol (C) N.D. +0.1 N.D. -7.3 -5.7
carbon source Methyl alpha-D-glucopyranoside (C) N.D. -0.1 N.D. -6.0 -7.0
carbon source palatinose (C) N.D. +0.2 N.D. -6.6 -6.5
carbon source Xylobiose (C) N.D. +0.1 N.D. -5.9 -7.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 N.D. +0.1 N.D. -5.4 -7.7
carbon source D-Cellobiose (C) N.D. +0.0 N.D. -6.2 -6.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.2 N.D. -7.8 -5.2
carbon source Ribitol (C) N.D. +0.1 N.D. -6.4 -6.5
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