Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1298 and Atu1299 are separated by 672 nucleotidesAtu1299 and Atu1300 are separated by 89 nucleotidesAtu1300 and Atu1301 are separated by 8 nucleotidesAtu1301 and Atu1302 are separated by 2 nucleotides Atu1298: Atu1298 - hypothetical protein, at 1,288,164 to 1,288,403 Atu1298 Atu1299: Atu1299 - 50S ribosomal protein L33, at 1,289,076 to 1,289,243 Atu1299 Atu1300: Atu1300 - MFS permease, at 1,289,333 to 1,290,508 Atu1300 Atu1301: Atu1301 - hypothetical protein, at 1,290,517 to 1,291,203 Atu1301 Atu1302: Atu1302 - hypothetical protein, at 1,291,206 to 1,291,649 Atu1302
Group Condition Atu1298 Atu1299 Atu1300 Atu1301 Atu1302
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.2 -0.8 -2.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.1 +0.2 -2.9
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -1.2 -0.5 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.5 -0.4 -1.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.4 -0.1 -1.7
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -1.2 -0.4 -0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.5 -0.2 -1.3
stress Chloramphenicol 12.5 ug/mL N.D. N.D. +0.1 -0.4 -1.6
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.5 -1.4 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.3 -0.3 -1.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -0.3 +0.2 -1.5
stress R2A with tungstate 375 mM N.D. N.D. -0.4 +0.5 -1.4
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -1.5 +0.3 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.2 +0.5 -1.3
lb_wheat LB_wheat N.D. N.D. -1.2 -0.2 +0.5
lb_maize LB_Maize N.D. N.D. -1.2 -0.1 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.5 -0.6 +0.8
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -1.2 +0.5 +1.1
phage AgroPhage_D10 N.D. N.D. +1.2 -0.8 +0.2
phage AgroPhage_F10 N.D. N.D. +1.3 -0.7 +0.1
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -0.7 +0.5 +1.0
stress Erythromycin 12.5 ug/mL N.D. N.D. +1.2 +0.3 -0.6
carbon source D-Saccharic potassium salt (C) N.D. N.D. +1.2 +0.2 +0.5
stress Streptomycin 200 ug/mL N.D. N.D. +1.0 +0.3 +0.6
phage AgroPhage_E10 N.D. N.D. +1.1 +0.5 +0.4
carbon source D-Saccharic potassium salt (C) N.D. N.D. +1.1 +0.2 +0.8
phage AgroPhage_F04 N.D. N.D. +1.3 +0.3 +0.6
nitrogen source DL-2-Aminobutyric (N) N.D. N.D. +1.1 +1.8 -0.2
stress R2A with Vancomycin 0.009 mM N.D. N.D. +5.7 +0.5 +0.9
stress R2A with Vancomycin 0.009 mM N.D. N.D. +7.1 +0.5 +1.2
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