Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1079 and Atu1080 are separated by 65 nucleotidesAtu1080 and Atu1081 are separated by 122 nucleotidesAtu1081 and Atu1082 are separated by 98 nucleotidesAtu1082 and Atu1083 overlap by 4 nucleotides Atu1079: Atu1079 - hypothetical protein, at 1,071,018 to 1,071,287 Atu1079 Atu1080: Atu1080 - alanine racemase, at 1,071,353 to 1,072,528 Atu1080 Atu1081: Atu1081 - transcriptional regulator, AraC family, at 1,072,651 to 1,073,472 Atu1081 Atu1082: Atu1082 - branched-chain amino acid permease, at 1,073,571 to 1,074,275 Atu1082 Atu1083: Atu1083 - hypothetical protein, at 1,074,272 to 1,074,574 Atu1083
Group Condition Atu1079 Atu1080 Atu1081 Atu1082 Atu1083
stress R2A with tungstate 375 mM N.D. +0.0 -0.4 -0.5 -0.7
phage AgroPhage_C04 N.D. -0.2 -0.3 -0.3 -0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.6 -0.2 -0.3 -0.2
stress R2A with Vancomycin 0.009 mM N.D. -0.9 -0.3 -0.0 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.0 +0.3 -0.5 -1.0
stress R2A with Vancomycin 0.009 mM N.D. -1.0 -0.2 -0.0 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 +0.0 -0.4 -0.7
nophagecontrol No phage control N.D. -0.2 -0.1 -0.2 -0.6
no phage P2L5 N.D. -0.2 -0.2 +0.1 -0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.2 +0.1 +0.5 -0.9
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.5 -0.0 -0.4 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.3 -0.2 -0.1 -0.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 -0.2 -0.7 +0.5
carbon source Rhamnogalacturonan - from potato (C) N.D. +0.2 -0.2 -0.7 +0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 -0.4 +0.5 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.4 -0.2 +0.5 -0.9
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.2 -0.1 -0.3 +0.5
phage AgroPhage_F10 N.D. -0.1 +0.3 +0.3 -0.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 -0.5 +0.1 +0.9
nitrogen source DL-2-Aminobutyric (N) N.D. -0.2 +0.2 -0.2 +0.5
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.5 +0.0 +0.3 -0.3
No phage control N.D. +0.3 +0.1 +0.0 +0.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.0 +0.1 +0.2 +0.8
Atjh2 N.D. +0.5 +0.1 +0.3 +0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.0 +0.2 +0.4 +0.6
Atjh2 N.D. +0.5 -0.2 +0.2 +0.7
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 -0.1 +0.2 +1.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.3 +0.1 +0.0 +0.8
Atjh14 N.D. +0.4 +0.2 +0.4 +0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.3 +0.1 +0.2 +0.9
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