Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1044 and Atu1045 are separated by 255 nucleotidesAtu1045 and Atu1046 are separated by 291 nucleotidesAtu1046 and Atu1047 are separated by 283 nucleotidesAtu1047 and Atu1048 overlap by 4 nucleotides Atu1044: Atu1044 - hypothetical protein, at 1,035,287 to 1,037,935 Atu1044 Atu1045: Atu1045 - hypothetical protein, at 1,038,191 to 1,039,750 Atu1045 Atu1046: Atu1046 - ABC transporter, substrate binding protein, at 1,040,042 to 1,041,085 Atu1046 Atu1047: Atu1047 - ABC transporter, nucleotide binding/ATPase protein, at 1,041,369 to 1,042,124 Atu1047 Atu1048: Atu1048 - ABC transporter, membrane spanning protein, at 1,042,121 to 1,042,939 Atu1048
Group Condition Atu1044 Atu1045 Atu1046 Atu1047 Atu1048
phage AgroPhage_E04 -0.2 -0.3 +0.1 -0.1 -0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.1 -0.0 -0.2 +0.1 -0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.0 +0.2 -0.4 +0.2 -0.8
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 +0.2 -0.1 -0.6
nitrogen source DL-2-Aminobutyric (N) +0.5 -0.4 -0.1 -0.2 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.1 -0.3 +0.3 -0.8
phage AgroPhage_D10 -0.1 -0.3 +0.1 +0.2 -0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.0 +0.2 -0.1 +0.2 -0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.0 +0.1 -0.2 +0.3 -0.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 -0.3 +0.2 +0.3 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.2 -0.3 +0.3 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.1 +0.3 -0.2 +0.2 -0.5
phage AgroPhage_F04 -0.1 +0.1 +0.1 +0.4 -0.5
phage AgroPhage_H04 +0.1 +0.1 +0.0 +0.5 -0.5
in planta Bethi_Library_OD0.01 -0.4 +0.2 +0.2 +0.3 -0.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.5 -0.3 -0.2 +0.4
phage AgroPhage_D07 +0.2 -0.2 +0.1 +0.4 -0.3
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.1 +0.3 +0.2 -0.4
stress Chloramphenicol 12.5 ug/mL +0.1 +0.3 +0.2 +0.2 -0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.8 +0.3 +0.2 -0.8
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.2 +0.1 +0.5 -0.7
Atjh14 +0.2 +0.5 -0.4 -0.2 +0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 +0.3 -0.1 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 -0.1 +0.4 -0.0 +0.3 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.4 +0.3 +0.1 +0.4
stress R2A with Polymyxin B sulfate 0.00075 mM +0.9 +0.1 +0.2 -0.1 +0.0
stress R2A with Vancomycin 0.009 mM +0.3 +0.3 +0.0 +0.2 +0.3
no phage P2L5 +0.1 +0.5 +0.2 +0.2 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.6 +0.1 +0.1 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.1 +0.2 +0.5 +0.4
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