Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1025 and Atu1026 are separated by 64 nucleotidesAtu1026 and Atu1027 are separated by 57 nucleotidesAtu1027 and Atu1028 are separated by 213 nucleotidesAtu1028 and Atu1029 are separated by 392 nucleotides Atu1025: Atu1025 - SSRA-binding protein, at 1,018,677 to 1,019,159 Atu1025 Atu1026: Atu1026 - hypothetical protein, at 1,019,224 to 1,019,406 Atu1026 Atu1027: Atu1027 - methyl-accepting chemotaxis protein, at 1,019,464 to 1,020,963 Atu1027 Atu1028: Atu1028 - hypothetical protein, at 1,021,177 to 1,021,746 Atu1028 Atu1029: Atu1029 - DNA-directed RNA polymerase omega subunit, at 1,022,139 to 1,022,528 Atu1029
Group Condition Atu1025 Atu1026 Atu1027 Atu1028 Atu1029
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -1.9 +0.0 -3.1 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -1.7 -0.1 -2.0 N.D.
stress R2A with Chloride 700 mM N.D. -0.0 -0.0 -3.5 N.D.
stress R2A with hypochlorite 6.25 mM N.D. -0.7 -0.1 -2.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.2 +0.2 -3.4 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.4 -0.0 -2.9 N.D.
stress R2A with Vancomycin 0.009 mM N.D. +0.1 +0.1 -3.4 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 -0.3 -2.2 N.D.
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. -1.0 +0.1 -2.0 N.D.
stress R2A with Lithium chloride 900 mM N.D. +0.4 +0.1 -3.3 N.D.
stress R2A with Vancomycin 0.009 mM N.D. -0.3 +0.2 -2.6 N.D.
r2a_control R2A control N.D. -0.1 +0.3 -2.8 N.D.
phage AgroPhage_E04 N.D. -4.1 -0.2 +1.7 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.6 -0.0 -2.6 N.D.
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.3 +0.3 -2.7 N.D.
stress R2A with Aluminum chloride 0.3 mM N.D. -0.2 +0.7 -2.4 N.D.
carbon source Glutaric (C) N.D. +0.9 +0.0 -2.4 N.D.
r2a_control R2A control N.D. +0.2 +0.6 -2.3 N.D.
stress R2A with silver chloride 5 mM N.D. +0.5 +1.0 -1.8 N.D.
stress R2A with Cobalt chloride 0.02 mM N.D. +0.4 +1.1 -1.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +2.4 -0.1 -1.7 N.D.
phage phage 95.1 N.D. -0.6 -0.0 +2.7 N.D.
phage AgroPhage_F10 N.D. -0.7 +0.1 +2.9 N.D.
phage AgroPhage_D10 N.D. +0.6 -0.0 +2.4 N.D.
phage AgroPhage_E10 N.D. +1.0 +0.0 +2.3 N.D.
phage Phage 95.3 + bacteria N.D. -0.1 +0.1 +3.5 N.D.
phage AgroPhage_C10 N.D. -0.8 +0.2 +4.2 N.D.
phage Phage 95.3 + bacteria N.D. +0.2 -0.1 +3.6 N.D.
phage Phage 95.3 + bacteria N.D. +0.3 -0.0 +3.6 N.D.
phage AgroPhage_C04 N.D. -0.7 -0.0 +4.8 N.D.
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