Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1005 and Atu1006 are separated by 66 nucleotidesAtu1006 and Atu1007 are separated by 258 nucleotidesAtu1007 and Atu1008 are separated by 119 nucleotidesAtu1008 and Atu1009 are separated by 132 nucleotides Atu1005: Atu1005 - hypothetical protein, at 1,001,596 to 1,001,826 Atu1005 Atu1006: Atu1006 - AMP nucleosidase, at 1,001,893 to 1,003,398 Atu1006 Atu1007: Atu1007 - hypothetical protein, at 1,003,657 to 1,003,908 Atu1007 Atu1008: Atu1008 - hypothetical protein, at 1,004,028 to 1,004,624 Atu1008 Atu1009: Atu1009 - hypothetical protein, at 1,004,757 to 1,005,095 Atu1009
Group Condition Atu1005 Atu1006 Atu1007 Atu1008 Atu1009
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.2 N.D. -0.7 -0.0 -0.7
carbon source D-Saccharic potassium salt (C) -0.9 N.D. -1.0 -0.3 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 N.D. +0.1 -0.3 -1.9
stress R2A with Vancomycin 0.009 mM +0.1 N.D. -0.9 -0.4 -0.9
carbon source Methyl alpha-D-glucopyranoside (C) -0.1 N.D. -1.0 +0.0 -0.9
carbon source Asolectin from soybean (C) -0.2 N.D. -0.8 +0.1 -1.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 N.D. -1.4 -0.5 +0.5
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 N.D. -0.6 +0.2 -1.0
phage AgroPhage_E10 -0.7 N.D. +0.3 -0.1 -0.9
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.4 N.D. -0.4 +0.4 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 N.D. +0.3 +0.2 -1.2
no phage P3L5 +0.6 N.D. -0.1 +0.0 -1.7
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 N.D. -0.8 -0.3 +0.5
phage phage 95.1 +0.3 N.D. -0.9 +0.4 -0.8
stress Chloramphenicol 12.5 ug/mL -1.5 N.D. -0.2 +0.6 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.2 N.D. -0.6 +0.2 +0.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.7 N.D. -0.8 +0.2 -0.7
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 N.D. +0.7 -0.2 -0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 N.D. -0.8 +0.2 +0.9
phage AgroPhage_F04 +0.7 N.D. +0.5 +0.1 -1.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 N.D. -0.8 +0.5 -0.6
stress R2A with hypochlorite 6.25 mM +0.2 N.D. +0.3 +0.3 -1.1
phage AgroPhage_D10 +1.1 N.D. -1.2 +0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 N.D. -0.6 +0.8 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 N.D. -0.6 +0.4 +1.0
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 N.D. -0.6 -0.0 +1.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.9 N.D. -0.8 +0.7 +0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 N.D. +0.5 -0.2 +1.0
phage AgroPhage_E04 +0.1 N.D. +0.9 -0.1 +1.1
nitrogen source DL-2-Aminobutyric (N) +0.4 N.D. +0.6 +1.2 +0.6
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