Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu1003 and Atu1004 are separated by 3 nucleotidesAtu1004 and Atu1005 overlap by 4 nucleotidesAtu1005 and Atu1006 are separated by 66 nucleotidesAtu1006 and Atu1007 are separated by 258 nucleotides Atu1003: Atu1003 - hypothetical protein, at 1,000,736 to 1,001,206 Atu1003 Atu1004: Atu1004 - hypothetical protein, at 1,001,210 to 1,001,599 Atu1004 Atu1005: Atu1005 - hypothetical protein, at 1,001,596 to 1,001,826 Atu1005 Atu1006: Atu1006 - AMP nucleosidase, at 1,001,893 to 1,003,398 Atu1006 Atu1007: Atu1007 - hypothetical protein, at 1,003,657 to 1,003,908 Atu1007
Group Condition Atu1003 Atu1004 Atu1005 Atu1006 Atu1007
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 -0.6 -1.2 N.D. -0.7
carbon source D-Saccharic potassium salt (C) -0.2 -0.1 -0.9 N.D. -1.0
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.9 -0.1 N.D. -0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.2 -0.5 N.D. -1.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.3 -1.4 N.D. -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.4 -0.1 -0.6 N.D. -1.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 -0.3 -0.9 N.D. -0.8
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.1 -1.2 N.D. -0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.8 +0.5 N.D. -0.8
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.5 -1.2 N.D. -0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 -0.4 -0.5 N.D. +0.6
stress Chloramphenicol 12.5 ug/mL +0.2 +0.8 -1.5 N.D. -0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.5 -0.6 N.D. +0.7
no phage P2L5 +0.3 -0.6 +0.5 N.D. -0.7
nophagecontrol No phage control +0.6 +0.1 -0.7 N.D. -0.5
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.5 -0.6 N.D. -0.6
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.7 +0.2 +0.5 N.D. -0.5
phage phage 95.1 +0.5 -0.1 +0.3 N.D. -0.9
carbon source Asolectin from soybean (C) +0.2 +0.6 -0.2 N.D. -0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.2 +0.7 N.D. -0.8
phage AgroPhage_D10 +0.5 -0.3 +1.1 N.D. -1.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -1.0 +1.2 N.D. +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.7 +0.3 N.D. -0.9
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.4 +0.0 +0.8 N.D. -0.8
Atjh14 -0.3 +1.0 -0.6 N.D. +0.7
phage AgroPhage_E04 +0.3 -0.6 +0.1 N.D. +0.9
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.5 +0.9 N.D. -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 +2.0 +0.5 N.D. -0.6
phage AgroPhage_C10 -0.0 +1.0 -0.1 N.D. +0.8
nitrogen source DL-2-Aminobutyric (N) +0.7 +0.2 +0.4 N.D. +0.6
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