Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0953 and Atu0954 are separated by 256 nucleotidesAtu0954 and Atu0955 are separated by 195 nucleotidesAtu0955 and Atu0956 are separated by 49 nucleotidesAtu0956 and Atu0957 are separated by 32 nucleotides Atu0953: Atu0953 - hypothetical protein, at 943,135 to 943,443 Atu0953 Atu0954: Atu0954 - phage head portal protein, at 943,700 to 944,866 Atu0954 Atu0955: Atu0955 - hypothetical protein, at 945,062 to 945,382 Atu0955 Atu0956: Atu0956 - phage prohead protease, at 945,432 to 946,004 Atu0956 Atu0957: Atu0957 - phage phi-C31 major capsid gp36-like protein, at 946,037 to 947,305 Atu0957
Group Condition Atu0953 Atu0954 Atu0955 Atu0956 Atu0957
stress R2A with Novobiocin 0.002 mM -3.0 -0.1 +0.0 -0.6 -0.1
stress R2A with Cobalt chloride 0.02 mM -2.7 +0.1 -0.4 -0.9 +0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -3.1 -0.1 +0.4 -0.9 +0.0
nophagecontrol No phage control -3.5 +0.1 +0.0 +0.0 +0.1
stress R2A with Chlorite 0.2 mM -2.9 +0.1 -0.2 -0.1 +0.0
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -3.0 +0.3 -0.1 -0.0 -0.1
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -2.8 -0.1 +0.1 -0.1 +0.2
nophagecontrol No phage control -3.6 +0.3 +0.1 +0.3 +0.2
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -3.1 -0.0 -0.3 +0.7 +0.0
stress R2A with hypochlorite 6.25 mM -2.1 +0.0 +0.1 -0.5 +0.2
stress R2A with Nalidixic 0.02 mM -2.4 -0.2 +0.1 -0.0 +0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.9 -0.1 +0.3 -0.6 -0.0
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.2 -0.1 -0.3 +0.2 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.7 -0.3 +0.5 -0.1 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -2.2 -0.1 +0.3 +0.0 +0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.6 +0.1 +0.4 -0.5 -0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.0 +0.2 -0.6 +0.4 +0.3
phage AgroPhage_A07 -2.1 -0.2 -0.1 +0.7 +0.1
lb_arabidopsis_leaf LB_arabidopsis_leaf -2.0 -0.0 +0.3 +0.3 -0.1
phage AgroPhage_C04 -2.6 +0.0 +0.2 +0.7 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.6 +0.6 -0.5 +0.4 +0.0
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.1 +0.3 -0.1 +0.6 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.9 +0.6 +1.0 +0.3 +0.3
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.9 -0.0 +1.4 +1.3 +0.7
phage AgroPhage_F04 +1.4 -0.1 -0.6 +0.7 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.5 +1.2 +0.7 +0.2
stress Chloramphenicol 12.5 ug/mL +2.2 +0.3 -0.0 -0.2 -0.2
stress Chloramphenicol 12.5 ug/mL +2.6 -0.0 -0.0 -0.3 -0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.6 +0.2 +0.2 +0.3 +0.5
phage AgroPhage_C10 +1.8 +0.0 +0.3 +1.0 +0.1
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