Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0935 and Atu0936 are separated by 107 nucleotidesAtu0936 and Atu0937 are separated by 235 nucleotidesAtu0937 and Atu0938 are separated by 41 nucleotidesAtu0938 and Atu0939 are separated by 322 nucleotides Atu0935: Atu0935 - hypothetical protein, at 924,473 to 924,748 Atu0935 Atu0936: Atu0936 - methyltransferase, at 924,856 to 925,464 Atu0936 Atu0937: Atu0937 - copper transporting ATPase, at 925,700 to 928,225 Atu0937 Atu0938: Atu0938 - transcriptional regulator, MerR family, at 928,267 to 928,644 Atu0938 Atu0939: Atu0939 - PemI protein, at 928,967 to 929,233 Atu0939
Group Condition Atu0935 Atu0936 Atu0937 Atu0938 Atu0939
phage AgroPhage_C04 -0.5 -0.3 +0.2 -2.0 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 -0.1 +0.0 -2.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 -0.3 -1.9 -0.3
phage AgroPhage_D10 -0.2 -0.0 -0.1 -2.1 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 -0.3 +0.1 -1.3 -0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.2 -0.1 -0.1 -1.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.3 -0.3 +0.4 -1.8
phage AgroPhage_C10 -0.5 -0.4 +0.1 -1.0 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.4 +0.4 -0.2 -1.8
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.4 +0.1 -0.9 -0.7
lb_tobacco_leaf LB_Tobacco_Leaf -0.4 -0.3 +0.0 -1.1 +0.2
pH R2A pH 5.5 +0.3 -0.2 -0.0 -0.0 -1.6
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.6 +0.0 +0.3 -1.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.2 -0.3 -0.2 -1.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 +0.5 +0.0 -1.1 -0.1
pH R2A pH 5.5 +0.3 -0.3 -0.0 +0.3 -1.3
phage AgroPhage_F10 +0.4 +0.4 -0.2 -0.6 -0.7
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 -0.6 +0.3 -0.3 -0.7
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.6 +0.2 -0.9 -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +0.1 -0.0 +0.3 -1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 +0.9 +0.1 -0.3 -0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.3 -0.0 +0.8 -0.9
phage phage 95.1 -0.1 +0.8 -0.1 -0.6 +0.4
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.4 -0.1 +0.6 -0.7
carbon source D-Saccharic potassium salt (C) +0.2 -0.2 -0.0 +1.4 -0.7
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +1.4 -0.1 -0.6 +0.5
nitrogen source DL-2-Aminobutyric (N) +0.7 +0.2 +0.1 +0.8 -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.4 -0.0 +1.2 -0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.9 -0.1 -0.2 +0.8 -0.2
carbon source D-Saccharic potassium salt (C) -0.5 +0.5 +0.1 +0.7 +0.4
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