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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu0930 and Atu0931 are separated by 345 nucleotides
Atu0931 and Atu0932 are separated by 178 nucleotides
Atu0932 and Atu0933 are separated by 111 nucleotides
Atu0933 and Atu0934 are separated by 27 nucleotides
Atu0930: Atu0930 - hypothetical protein, at 918,455 to 919,900
Atu0930
Atu0931: Atu0931 - penicillin binding protein, at 920,246 to 922,519
Atu0931
Atu0932: Atu0932 - hypothetical protein, at 922,698 to 923,177
Atu0932
Atu0933: Atu0933 - beta-lactamase class D, at 923,289 to 924,113
Atu0933
Atu0934: Atu0934 - hypothetical protein, at 924,141 to 924,476
Atu0934
Group
Condition
Atu0930
Atu0931
Atu0932
Atu0933
Atu0934
stress
methyl jasmonate 5 mM
-0.1
-2.6
+0.1
-0.2
-0.3
stress
methyl jasmonate 5 mM
-0.0
-2.1
+0.1
-0.0
-0.3
carbon source
L-ascorbate (C)
+0.1
-2.2
+0.1
+0.1
-0.2
in planta
Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.1
-0.8
-0.4
+0.2
-0.8
stress
R2A with hypochlorite 6.25 mM
+0.2
-2.3
-0.1
+0.3
+0.1
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.2
-1.9
-0.2
-0.1
+0.8
in planta
Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.4
-1.0
-0.3
-0.3
+0.4
carbon source
L-ascorbate (C)
+0.1
-1.7
+0.3
-0.1
-0.1
stress
R2A with Magnesium sulfate 400 mM
-0.0
-1.7
-0.1
+0.5
+0.1
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.5
-1.8
+0.5
+0.2
-0.4
in planta
Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.1
-1.0
-0.7
-0.2
+0.9
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.1
-1.2
+0.6
+0.3
-0.4
in planta
Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.1
-0.5
+0.8
-0.7
-0.2
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.6
-1.6
+0.3
-0.0
+0.0
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.2
-1.0
+0.8
-0.3
+0.2
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.3
-0.8
-0.3
-0.3
+0.6
in planta
Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.3
-0.6
+0.6
+0.4
-0.3
nitrogen source
DL-2-Aminobutyric (N)
+0.0
-0.7
-0.5
+2.1
-0.1
phage
AgroPhage_H10
-0.0
+0.9
+0.6
-0.2
-0.4
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.4
-1.0
+0.4
+0.5
+0.7
phage
AgroPhage_F04
-0.3
+1.8
+0.2
+0.0
-0.1
carbon source
L-(+)-Erythrulose (C)
-0.1
+1.9
+0.1
-0.1
-0.1
phage
AgroPhage_E04
-0.2
+1.9
+0.6
+0.0
-0.4
phage
AgroPhage_D04
-0.1
+1.8
-0.3
+0.6
-0.0
phage
AgroPhage_E10
-0.3
+1.8
+0.7
+0.4
-0.3
carbon source
sarcosine (C)
+0.1
+2.7
-0.0
+0.1
-0.3
phage
AgroPhage_F10
+0.0
+1.7
+0.3
+0.6
+0.1
phage
AgroPhage_D10
+0.0
+1.7
+0.1
+0.8
+0.2
stress
R2A with Vancomycin 0.009 mM
-0.1
+3.6
-0.3
+0.4
-0.0
stress
R2A with Vancomycin 0.009 mM
-0.0
+4.6
+0.1
+0.0
+0.2
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