Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0879 and Atu0881 are separated by 227 nucleotidesAtu0881 and Atu0882 are separated by 87 nucleotidesAtu0882 and Atu0883 are separated by 455 nucleotidesAtu0883 and Atu0884 are separated by 11 nucleotides Atu0879: Atu0879 - RhtB family transporter, at 875,273 to 875,917 Atu0879 Atu0881: Atu0881 - cytochrome C-556, at 876,145 to 876,552 Atu0881 Atu0882: Atu0882 - hypothetical protein, at 876,640 to 877,560 Atu0882 Atu0883: Atu0883 - hypothetical protein, at 878,016 to 878,198 Atu0883 Atu0884: Atu0884 - hypothetical protein, at 878,210 to 878,920 Atu0884
Group Condition Atu0879 Atu0881 Atu0882 Atu0883 Atu0884
phage AgroPhage_F10 -0.3 -0.6 -0.7 -0.8 -0.4
stress R2A with Vancomycin 0.009 mM -0.1 -0.0 +0.2 -1.4 -0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -0.6 -0.2 -0.2 +0.3
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.3 +0.3 +0.0 -0.6 -0.7
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.0 -0.2 -1.5 +0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.4 -0.2 -0.9 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 -0.6 +0.4 -0.8
phage AgroPhage_D04 -0.2 +0.6 +0.0 -1.7 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.6 +0.1 -0.6 -0.2
phage AgroPhage_F04 -0.3 -0.4 -0.1 +0.7 -0.4
Atjh10 +0.1 -0.5 -0.3 +0.6 -0.4
carbon source Rhamnogalacturonan - from potato (C) -0.2 +0.6 +0.1 -0.3 -0.6
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 -0.2 +0.8 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.1 -0.4 +0.5 -0.6
phage AgroPhage_C10 -0.3 +0.8 -0.6 -0.7 +0.5
Atjh14 +0.2 -0.5 -0.4 +0.8 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.1 +0.0 +0.0 -0.8 -0.4
phage AgroPhage_C04 -0.0 -0.1 -0.7 +1.1 -0.1
stress R2A with tungstate 375 mM -0.0 -0.6 +0.7 -0.2 +0.4
phage AgroPhage_B07 -0.6 +0.5 -0.2 +0.6 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.0 -0.4 -0.1 +1.2 -0.3
stress Chloramphenicol 12.5 ug/mL -0.2 +0.6 +0.3 -0.4 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.0 +0.0 +0.2 -1.2 +0.8
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 -0.3 +0.5 +0.4 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 +0.4 -0.2 +0.7 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 -0.2 +0.4 +0.6 +0.2
nitrogen source DL-2-Aminobutyric (N) -0.3 +0.0 +0.5 +0.5 +1.1
no phage P2L5 -0.3 +0.3 -0.0 +1.6 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.2 -0.1 +1.5 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.7 +0.1 +1.7 +0.6
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