Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0871 and Atu0872 are separated by 169 nucleotidesAtu0872 and Atu0873 are separated by 226 nucleotidesAtu0873 and Atu0874 are separated by 96 nucleotidesAtu0874 and Atu0875 are separated by 5 nucleotides Atu0871: Atu0871 - branched-chain-amino-acid aminotransferase, at 867,117 to 867,998 Atu0871 Atu0872: Atu0872 - methyl-accepting chemotaxis protein, at 868,168 to 870,525 Atu0872 Atu0873: Atu0873 - transcriptional regulator, LysR family, at 870,752 to 871,639 Atu0873 Atu0874: Atu0874 - acetyltransferase, at 871,736 to 872,278 Atu0874 Atu0875: Atu0875 - hypothetical protein, at 872,284 to 872,763 Atu0875
Group Condition Atu0871 Atu0872 Atu0873 Atu0874 Atu0875
nitrogen source L-Valine (N) -2.9 -0.2 +0.1 -0.1 -0.1
nitrogen source L-Valine (N) -2.5 -0.1 +0.0 -0.0 -0.0
nitrogen source L-Leucine (N) -2.4 -0.1 +0.1 +0.2 -0.0
nitrogen source L-Leucine (N) -1.7 -0.1 +0.1 +0.1 +0.1
nitrogen source L-Methionine (N) -1.1 -0.1 -0.0 -0.0 -0.1
nitrogen source L-Isoleucine (N) -1.1 -0.1 +0.2 -0.2 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.0 -0.4 +0.2 -0.9
nitrogen source L-Isoleucine (N) -1.3 -0.1 -0.2 +0.3 +0.1
nitrogen source L-Methionine (N) -0.8 -0.2 +0.1 -0.1 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.1 -0.0 +0.3 -0.9
stress R2A with m-arsenite 0.8 mM +0.3 +0.1 -0.0 -0.6 -0.3
phage AgroPhage_H04 -0.2 -0.2 -0.4 +0.5 -0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.1 +0.1 +0.4 -0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.2 -0.3 +0.7 -0.3
phage AgroPhage_B07 -0.1 -0.2 +0.2 +0.5 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.0 +0.0 +0.6 -0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.1 +0.4 -0.2 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.5 -0.0 +0.3 +0.3 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.0 -0.1 -0.1 +1.0
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.0 -0.3 -0.1 +0.5
carbon source L-ascorbate (C) +0.5 -0.2 -0.2 +0.1 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +0.4 -0.4 +0.0 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 +0.0 +0.3 +0.7 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.3 -0.5 +0.5 +0.2
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.1 +0.1 +0.6 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +0.0 +0.4 +1.0 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.2 +0.5 +0.5 -0.1
nitrogen source DL-2-Aminobutyric (N) -0.0 +0.3 +0.1 +1.3 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 +0.2 +0.1 +0.0 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.2 +0.4 +1.0 +0.7
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