Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0869 and Atu0870 are separated by 5 nucleotidesAtu0870 and Atu0871 are separated by 334 nucleotidesAtu0871 and Atu0872 are separated by 169 nucleotidesAtu0872 and Atu0873 are separated by 226 nucleotides Atu0869: Atu0869 - hypothetical protein, at 865,638 to 866,006 Atu0869 Atu0870: Atu0870 - trans-aconitate methyltransferase, at 866,012 to 866,782 Atu0870 Atu0871: Atu0871 - branched-chain-amino-acid aminotransferase, at 867,117 to 867,998 Atu0871 Atu0872: Atu0872 - methyl-accepting chemotaxis protein, at 868,168 to 870,525 Atu0872 Atu0873: Atu0873 - transcriptional regulator, LysR family, at 870,752 to 871,639 Atu0873
Group Condition Atu0869 Atu0870 Atu0871 Atu0872 Atu0873
nitrogen source L-Valine (N) -0.2 -0.1 -2.9 -0.2 +0.1
nitrogen source L-Valine (N) +0.1 +0.2 -2.5 -0.1 +0.0
nitrogen source L-Leucine (N) +0.1 -0.0 -2.4 -0.1 +0.1
nitrogen source L-Leucine (N) -0.2 +0.1 -1.7 -0.1 +0.1
stress Chloramphenicol 12.5 ug/mL -0.6 -0.4 -0.3 +0.1 -0.2
nitrogen source L-Isoleucine (N) +0.2 -0.0 -1.3 -0.1 -0.2
nitrogen source L-Methionine (N) +0.1 +0.0 -1.1 -0.1 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -0.7 +0.2 -0.1 -0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.4 -0.1 -0.2 -0.6
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.1 +0.1 -0.0 -0.6
nitrogen source L-Isoleucine (N) -0.0 +0.1 -1.1 -0.1 +0.2
nitrogen source L-Methionine (N) -0.0 +0.2 -0.8 -0.2 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.7 +0.5 -0.0 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -0.3 +0.3 +0.3 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 +0.0 +0.5 +0.0 +0.1
phage AgroPhage_D10 +0.4 +0.4 -0.6 +0.0 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.4 -0.3 -0.2 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.2 -0.5 +0.0 +0.3
phage AgroPhage_F04 +0.3 -0.5 +0.3 +0.3 -0.0
phage AgroPhage_C04 +0.3 -0.7 +0.9 -0.1 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.0 +0.3 -0.4 -0.0 -0.3
Atjh15 +0.3 +0.0 +0.6 +0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +0.1 +0.6 -0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.0 +0.7 +0.4 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 +1.0 -0.3 -0.0 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.2 +0.2 +0.2 +0.5
phage AgroPhage_D04 +0.2 +0.7 -0.0 -0.1 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -0.3 +0.6 +0.2 +0.1
Atjh14 +0.5 -0.1 +0.6 +0.2 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +0.5 +0.4 -0.1 +0.2
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