Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0828 and Atu0829 are separated by 11 nucleotidesAtu0829 and Atu0830 are separated by 230 nucleotidesAtu0830 and Atu8138 are separated by 299 nucleotidesAtu8138 and Atu0832 are separated by 173 nucleotides Atu0828: Atu0828 - transcriptional regulator BetI, at 826,620 to 827,240 Atu0828 Atu0829: Atu0829 - betaine aldehyde dehydrogenase, at 827,252 to 828,733 Atu0829 Atu0830: Atu0830 - choline dehydrogenase, at 828,964 to 830,613 Atu0830 Atu8138: Atu8138 - hypothetical protein, at 830,913 to 831,188 Atu8138 Atu0832: Atu0832 - chloride channel protein, at 831,362 to 832,678 Atu0832
Group Condition Atu0828 Atu0829 Atu0830 Atu8138 Atu0832
nitrogen source Choline chloride (N) -2.8 -2.8 -2.9 -0.4 +0.2
nitrogen source Choline chloride (N) -2.1 -2.9 -2.7 +0.1 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.4 -0.2 -3.7 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.4 -0.2 -3.8 -0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.2 +0.0 -3.8 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.2 -0.2 -4.2 +0.0
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -0.3 -0.1 -2.7 -0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.0 +0.2 -3.7 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -0.2 -0.2 -3.3 +0.0
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.1 +0.0 -3.2 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.2 -0.0 -2.8 -0.3
stress R2A with Tetracycline 0.002 mM -0.3 +0.0 +0.1 -3.1 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -0.3 -0.1 -3.0 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 -0.1 -2.7 -0.4
stress R2A with Vancomycin 0.009 mM -0.3 -0.2 -0.8 -1.7 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 +0.0 -2.9 +0.0
lb_sorghum_leaf LB_sorghum_leaf -0.5 -0.2 -0.2 -1.4 -0.5
stress R2A with Vancomycin 0.009 mM -0.2 -0.3 -0.7 -1.6 +0.1
phage phage 100.2 -0.0 -0.2 -0.2 -2.2 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 -0.1 -0.1 -1.9 -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.1 +0.4 -2.5 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 +0.1 -2.3 -0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.1 -0.1 -1.9 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.1 +0.2 -2.5 +0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.6 +0.3 -1.6 -0.1
no phage P2L5 +0.2 -0.2 +0.1 -2.0 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.2 -0.0 +0.1 -2.1 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -0.0 -0.0 -2.1 -0.0
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.0 +0.0 -2.0 +0.1
phage AgroPhage_C10 -0.2 -0.2 -0.2 +1.9 +0.3
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