Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0825 and Atu0826 are separated by 118 nucleotidesAtu0826 and Atu0827 are separated by 172 nucleotidesAtu0827 and Atu0828 are separated by 365 nucleotidesAtu0828 and Atu0829 are separated by 11 nucleotides Atu0825: Atu0825 - quinone oxidoreductase, at 822,932 to 823,915 Atu0825 Atu0826: Atu0826 - hypothetical protein, at 824,034 to 825,845 Atu0826 Atu0827: Atu0827 - hypothetical protein, at 826,018 to 826,254 Atu0827 Atu0828: Atu0828 - transcriptional regulator BetI, at 826,620 to 827,240 Atu0828 Atu0829: Atu0829 - betaine aldehyde dehydrogenase, at 827,252 to 828,733 Atu0829
Group Condition Atu0825 Atu0826 Atu0827 Atu0828 Atu0829
nitrogen source Choline chloride (N) -0.2 -0.2 +0.2 -2.8 -2.8
nitrogen source Choline chloride (N) +0.1 -0.1 +0.0 -2.1 -2.9
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.2 -0.3 -0.4 -0.4
phage AgroPhage_D04 -0.2 +0.2 -0.8 -0.4 +0.0
phage AgroPhage_F03 -0.8 -0.2 -0.4 +0.3 -0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.4 -1.0 -0.0 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.0 -0.0 +0.1 -0.1 -0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.1 -0.5 -0.5 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.1 +0.2 -0.9 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.8 -0.5 +0.3 +0.3 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.1 -0.5 +0.5 -0.0
Atjh2 -0.2 -0.2 -0.6 +0.4 -0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.3 +0.4 -0.4 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.2 -0.2 +0.5 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.3 +0.4 -0.1 -0.4
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 +0.3 -0.6 +0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.1 +0.5 +0.1 -0.6
phage AgroPhage_F04 -0.5 +0.3 -0.2 +0.4 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.8 -0.1 -0.3 -0.4 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.3 +1.2 +0.1 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 +0.1 -0.5 +0.3 +0.4
stress Erythromycin 12.5 ug/mL +0.5 +0.4 -0.3 +0.3 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 +1.0 -0.1 +0.3 +0.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +0.4 +0.4 -0.2 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 +1.2 +0.1 +0.1 -0.0 +0.0
stress Erythromycin 12.5 ug/mL +0.5 +0.7 +0.4 -0.2 +0.1
nitrogen source DL-2-Aminobutyric (N) -0.0 +0.4 +0.7 +0.7 -0.1
stress Chloramphenicol 12.5 ug/mL +1.5 +0.1 -0.0 +0.1 -0.0
phage AgroPhage_E10 +0.3 +0.4 +0.4 +0.4 +0.3
stress Chloramphenicol 12.5 ug/mL +1.7 -0.3 +0.1 -0.1 +0.4
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