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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu0804 and Atu0805 are separated by 32 nucleotides
Atu0805 and Atu0806 are separated by 254 nucleotides
Atu0806 and Atu0807 are separated by 178 nucleotides
Atu0807 and Atu0808 are separated by 203 nucleotides
Atu0804: Atu0804 - proton/glutamate transport protein, at 805,152 to 806,516
Atu0804
Atu0805: Atu0805 - hypothetical protein, at 806,549 to 807,022
Atu0805
Atu0806: Atu0806 - hypothetical protein, at 807,277 to 808,197
Atu0806
Atu0807: Atu0807 - metallo-beta-lactamase superfamily protein, at 808,376 to 809,284
Atu0807
Atu0808: Atu0808 - tRNA-Gln, at 809,488 to 809,562
Atu0808
Group
Condition
Atu0804
Atu0805
Atu0806
Atu0807
Atu0808
carbon source
p-Coumaric (C)
-0.0
+0.0
+0.1
-3.7
N.D.
carbon source
p-Coumaric (C)
+0.0
-0.3
+0.1
-3.5
N.D.
carbon source
Phloretic Acid (C)
+0.1
-0.1
+0.0
-2.8
N.D.
carbon source
Ferulic Acid (C)
-0.0
+0.1
+0.1
-1.8
N.D.
in planta
Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.9
-0.4
-0.3
-0.0
N.D.
stress
Erythromycin 12.5 ug/mL
-0.1
-0.4
-1.2
+0.2
N.D.
in planta
Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.5
-0.6
-0.2
-0.3
N.D.
carbon source
Phloretic Acid (C)
+0.2
-0.0
+0.2
-1.9
N.D.
in planta
Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.8
+0.1
-0.3
-0.4
N.D.
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.7
+0.0
-0.2
-0.6
N.D.
carbon source
m-Inositol (C)
+0.1
-0.2
-0.0
-1.2
N.D.
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.4
-0.5
-0.1
-1.0
N.D.
stress
R2A with hypochlorite 6.25 mM
-0.9
+0.4
-0.7
+0.1
N.D.
stress
R2A with Chloride 800 mM
-1.1
+0.4
-0.3
+0.2
N.D.
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.2
+0.2
-0.5
-0.6
N.D.
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.3
+0.4
+0.1
-0.6
N.D.
nitrogen source
L-Pipecolic Acid (N)
+0.2
+0.2
+0.2
-0.9
N.D.
in planta
Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.8
-0.1
+0.3
+0.4
N.D.
in planta
Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.6
-0.2
+0.4
+0.3
N.D.
in planta
Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.1
+0.7
+0.2
-0.5
N.D.
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.4
+0.5
-0.4
-0.1
N.D.
phage
AgroPhage_E10
+0.1
+0.8
+0.8
-1.0
N.D.
stress
R2A with Vancomycin 0.009 mM
-0.0
+0.1
+1.3
-0.2
N.D.
phage
AgroPhage_E04
+0.1
-0.1
+0.9
+0.5
N.D.
nitrogen source
L-Histidine (N)
+1.3
+0.1
+0.1
+0.1
N.D.
nitrogen source
L-Histidine (N)
+1.3
+0.1
+0.3
-0.0
N.D.
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.1
+0.8
+0.2
+0.5
N.D.
in planta
Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.6
+0.3
+0.3
+0.6
N.D.
stress
R2A with Vancomycin 0.009 mM
-0.0
+0.4
+1.6
+0.1
N.D.
stress
R2A with m-arsenite 0.8 mM
+1.0
+0.6
-0.0
+0.6
N.D.
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