Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0704 and Atu0705 overlap by 1 nucleotidesAtu0705 and Atu0706 are separated by 109 nucleotidesAtu0706 and Atu0707 are separated by 345 nucleotidesAtu0707 and Atu0708 are separated by 78 nucleotides Atu0704: Atu0704 - 2-dehydro-3-deoxygalactonate kinase, at 704,239 to 705,153 Atu0704 Atu0705: Atu0705 - 3-oxoacyl-(acyl carrier protein) reductase, at 705,153 to 705,926 Atu0705 Atu0706: Atu0706 - transcriptional regulator, IclR family, at 706,036 to 706,875 Atu0706 Atu0707: Atu0707 - transcriptional regulator, LuxR family, at 707,221 to 707,826 Atu0707 Atu0708: Atu0708 - ABC transporter, nucleotide binding/ATPase protein, at 707,905 to 709,128 Atu0708
Group Condition Atu0704 Atu0705 Atu0706 Atu0707 Atu0708
carbon source D-Galactose (C) -4.5 -4.3 +0.0 +0.3 -0.1
carbon source D-Galactose (C) -4.6 -4.2 +0.2 +0.1 +0.0
carbon source Melibiose (C) -2.8 -2.1 +0.1 -0.0 -0.1
carbon source Melibiose (C) -2.8 -1.9 +0.1 -0.2 +0.0
carbon source D-Raffinose (C) -2.0 -1.1 -0.1 -0.1 -0.1
carbon source Stachyose (C) -1.6 -1.1 -0.1 +0.0 +0.0
carbon source D-Raffinose (C) -1.6 -0.9 +0.2 -0.0 -0.1
carbon source Stachyose (C) -1.5 -1.1 +0.1 +0.2 -0.1
carbon source L-ascorbate (C) -0.1 -0.0 -0.3 -0.1 -1.0
carbon source D-Saccharic potassium salt (C) -0.0 -0.2 -0.1 -1.1 -0.1
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.3 -0.5 -0.4 -0.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.0 -0.5 -0.5 -0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 -0.3 -0.6 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.2 -0.8 -0.1 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.1 -0.0 -0.7 -0.2
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.2 -0.3 -0.5 -0.1
phage AgroPhage_E10 +0.1 -0.3 +0.2 -0.7 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.4 -0.3 -0.6 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.4 -0.7 -0.0 -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 -0.2 -0.9 +0.0 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.4 -0.8 -0.1 -0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.2 -0.2 -0.9 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.4 -0.3 -0.7 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.0 -0.2 -0.7 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.2 -0.6 +0.3 +0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 -0.5 -0.3 +0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -0.3 -0.5 +0.9 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +0.3 -0.6 +0.5 -0.1
phage AgroPhage_C04 -0.5 +0.4 +0.5 -0.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.6 +0.2 -0.2 +0.3
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