Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0702 and Atu0703 are separated by 4 nucleotidesAtu0703 and Atu0704 are separated by 15 nucleotidesAtu0704 and Atu0705 overlap by 1 nucleotidesAtu0705 and Atu0706 are separated by 109 nucleotides Atu0702: Atu0702 - calcium-binding protein, regucalcin, at 702,702 to 703,589 Atu0702 Atu0703: Atu0703 - keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase, at 703,594 to 704,223 Atu0703 Atu0704: Atu0704 - 2-dehydro-3-deoxygalactonate kinase, at 704,239 to 705,153 Atu0704 Atu0705: Atu0705 - 3-oxoacyl-(acyl carrier protein) reductase, at 705,153 to 705,926 Atu0705 Atu0706: Atu0706 - transcriptional regulator, IclR family, at 706,036 to 706,875 Atu0706
Group Condition Atu0702 Atu0703 Atu0704 Atu0705 Atu0706
carbon source D-Galactose (C) -1.5 -7.0 -4.5 -4.3 +0.0
carbon source D-Galactose (C) -0.8 -7.0 -4.6 -4.2 +0.2
carbon source Melibiose (C) -0.5 -6.9 -2.8 -1.9 +0.1
carbon source Melibiose (C) -0.2 -5.4 -2.8 -2.1 +0.1
carbon source D-Raffinose (C) -0.4 -6.8 -2.0 -1.1 -0.1
carbon source Stachyose (C) -0.3 -6.7 -1.6 -1.1 -0.1
carbon source Stachyose (C) -0.4 -5.1 -1.5 -1.1 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -6.3 +0.1 -0.1 -0.3
carbon source Rhamnogalacturonan - from potato (C) -0.3 -5.3 -0.7 -0.3 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -6.4 +0.2 -0.0 -0.1
carbon source D-Raffinose (C) -0.3 -3.4 -1.6 -0.9 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -5.0 -0.0 -0.1 +0.1
carbon source D-Galacturonic Acid (C) -0.4 -5.1 +0.1 +0.3 +0.1
carbon source Rhamnogalacturonan - from potato (C) -0.4 -2.7 -0.6 -0.4 -0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -3.1 +0.2 -0.2 -0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -4.3 +0.2 -0.2 +0.1
carbon source Methyl-B-D-galactopyranoside (C) -0.5 -2.8 -0.2 -0.4 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -3.6 +0.0 +0.2 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -3.7 +0.2 -0.2 +0.0
carbon source alpha-Lactose (C) -1.3 -2.0 -0.3 -0.3 +0.4
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -3.2 +0.0 +0.1 -0.4
phage AgroPhage_C04 -0.1 -3.6 -0.5 +0.4 +0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -2.8 -0.2 +0.1 -0.2
carbon source Methyl-B-D-galactopyranoside (C) -0.4 -2.0 -0.5 -0.0 -0.0
carbon source alpha-Lactose (C) -1.1 -1.6 -0.4 -0.3 +0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -2.3 -0.1 +0.1 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 +0.0 -2.6 -0.1 -0.3 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 -0.1 -2.5 +0.2 -0.0 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -2.1 +0.4 +0.1 -0.3
carbon source D-Galacturonic Acid (C) -0.3 -2.5 +0.4 +0.2 -0.0
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