Fitness for 5 genes in Agrobacterium fabrum C58

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 953 experiments or choose conditions or try the comparative fitness browser

500 ntAtu0667 and Atu0668 overlap by 4 nucleotidesAtu0668 and Atu0669 are separated by 259 nucleotidesAtu0669 and Atu0670 are separated by 238 nucleotidesAtu0670 and Atu8085 overlap by 4 nucleotides Atu0667: Atu0667 - glycolate oxidase iron-sulfur subunit, at 663,091 to 664,392 Atu0667 Atu0668: Atu0668 - hypothetical protein, at 664,389 to 665,048 Atu0668 Atu0669: Atu0669 - hypothetical protein, at 665,308 to 666,084 Atu0669 Atu0670: Atu0670 - 3-methyladenine-DNA glycosylase, at 666,323 to 666,952 Atu0670 Atu8085: Atu8085 - hypothetical protein, at 666,949 to 667,392 Atu8085
Group Condition Atu0667 Atu0668 Atu0669 Atu0670 Atu8085
carbon source L-Xylose (C) -2.3 -0.1 +0.0 -0.0 +0.0
carbon source L-Xylose (C) -1.9 -0.0 -0.0 +0.1 -0.1
carbon source Dihydroxyacetone (C) -1.2 -0.2 +0.0 -0.0 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.1 -0.2 -0.3 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 -0.5 +0.0 -0.7
carbon source Dihydroxyacetone (C) -1.2 +0.2 +0.0 +0.0 -0.1
phage AgroPhage_D04 +0.2 -0.3 -0.2 +0.3 -0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.7 +0.1 +0.2 +0.3
carbon source L-ascorbate (C) +1.1 +0.2 +0.2 -0.4 -1.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -0.1 -0.1 -0.5 +0.8
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.6 +0.4 -0.2 -0.2
stress R2A with Vancomycin 0.009 mM +0.3 -0.8 -0.3 +0.3 +0.8
stress R2A with Vancomycin 0.009 mM -0.1 -0.0 -0.5 +0.3 +0.6
nophagecontrol No phage control -0.1 +0.4 +0.3 +0.3 -0.5
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.4 -0.4 +0.1 +0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 -0.5 +0.2 +0.8
nitrogen source DL-2-Aminobutyric (N) -0.1 +0.1 +0.6 -0.4 +0.4
carbon source L-ascorbate (C) +1.4 -0.1 -0.1 -0.2 -0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.3 -0.0 -0.0 +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +0.5 +0.2 +0.4 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.4 +0.3 +0.5 -0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 -0.0 -0.1 +0.9
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.2 +0.4 +0.2 +0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.1 +0.6 +0.0 +0.3 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 -0.1 +0.3 +0.8 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.0 +0.2 -0.1 +0.9
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +0.6 +0.2 -0.1 +0.6
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.1 -0.0 +0.3 +1.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 +0.4 +0.7 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.3 +0.4 +0.3 +0.6
remove
Atu0667
plot		 remove
Atu0668
plot		 remove
Atu0669		 remove
Atu0670
plot		 remove
Atu8085
plot