Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0652 and Atu0653 are separated by 367 nucleotidesAtu0653 and Atu0654 are separated by 40 nucleotidesAtu0654 and Atu8135 are separated by 202 nucleotidesAtu8135 and Atu0656 are separated by 172 nucleotides Atu0652: Atu0652 - hypothetical protein, at 644,810 to 645,376 Atu0652 Atu0653: Atu0653 - hypothetical protein, at 645,744 to 648,182 Atu0653 Atu0654: Atu0654 - transcriptional regulator, LysR family, at 648,223 to 649,173 Atu0654 Atu8135: Atu8135 - hypothetical protein, at 649,376 to 649,669 Atu8135 Atu0656: Atu0656 - glutamate-cysteine ligase, at 649,842 to 651,215 Atu0656
Group Condition Atu0652 Atu0653 Atu0654 Atu8135 Atu0656
nitrogen source L-Ornithine (N) N.D. -0.1 -2.8 -2.6 N.D.
nitrogen source L-Ornithine (N) N.D. +0.1 -2.6 -2.1 N.D.
nitrogen source L-Arginine (N) N.D. +0.0 -1.1 -0.8 N.D.
nitrogen source L-Arginine (N) N.D. -0.0 -1.0 -0.8 N.D.
nitrogen source L-Valine (N) N.D. -0.0 -0.2 -1.5 N.D.
stress R2A with Vancomycin 0.009 mM N.D. -0.5 -0.5 -0.6 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 -0.8 -0.5 N.D.
nitrogen source L-Valine (N) N.D. -0.1 +0.2 -1.4 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 -0.8 -0.6 N.D.
nitrogen source L-Pipecolic Acid (N) N.D. -0.1 -0.6 -0.4 N.D.
carbon source D-Xylose (C) N.D. -0.1 -0.5 -0.4 N.D.
nitrogen source D-Lysine (N) N.D. -0.0 -1.0 -0.0 N.D.
nitrogen source DL-2-Aminobutyric (N) N.D. +0.1 -0.4 -0.5 N.D.
nitrogen source L-Histidine (N) N.D. +0.4 -0.8 -0.4 N.D.
nitrogen source L-Methionine (N) N.D. +0.1 -1.2 +0.4 N.D.
nitrogen source L-Histidine (N) N.D. +0.4 -0.7 -0.3 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 -1.2 +0.4 N.D.
phage AgroPhage_B01 N.D. +0.6 -0.3 -0.3 N.D.
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.2 -0.2 +0.7 N.D.
phage AgroPhage_D10 N.D. +0.6 -0.3 +0.3 N.D.
phage AgroPhage_B07 N.D. +0.6 -0.1 +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.1 +0.5 +0.6 N.D.
nitrogen source Hydantoin (N) N.D. -0.1 +0.7 +0.5 N.D.
stress R2A with Cobalt chloride 0.02 mM N.D. +0.7 +0.1 +0.5 N.D.
nitrogen source L-Phenylalanine (N) N.D. +0.1 -0.2 +1.6 N.D.
nitrogen source 2,6-diaminopimelic (N) N.D. -0.1 -0.1 +1.6 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 +0.9 +0.8 N.D.
nitrogen source 2,6-diaminopimelic (N) N.D. -0.0 +0.1 +1.8 N.D.
nitrogen source L-Phenylalanine (N) N.D. +0.0 +0.1 +1.8 N.D.
nitrogen source Hydantoin (N) N.D. -0.0 +0.8 +1.2 N.D.
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