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Cofit
Fitness for 5 genes in
Agrobacterium fabrum C58
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500 nt
Atu0613 and Atu0614 are separated by 359 nucleotides
Atu0614 and Atu0616 are separated by 317 nucleotides
Atu0616 and Atu0619 are separated by 208 nucleotides
Atu0619 and Atu0620 overlap by 4 nucleotides
Atu0613: Atu0613 - ABC transporter, membrane spanning protein, at 600,771 to 602,351
Atu0613
Atu0614: Atu0614 - two component sensor kinase, at 602,711 to 606,538
Atu0614
Atu0616: Atu0616 - tRNA-His, at 606,856 to 606,932
Atu0616
Atu0619: Atu0619 - exopolyphosphatase, at 607,141 to 608,841
Atu0619
Atu0620: Atu0620 - cell division protein, at 608,838 to 609,578
Atu0620
Group
Condition
Atu0613
Atu0614
Atu0616
Atu0619
Atu0620
stress
R2A with m-arsenite 0.8 mM
-0.7
N.D.
N.D.
N.D.
N.D.
nitrogen source
DL-2-Aminobutyric (N)
-0.6
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.5
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
-0.5
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.5
N.D.
N.D.
N.D.
N.D.
stress
R2A with Manganese (II) chloride tetrahydrate 5 mM
-0.5
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.5
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days
-0.5
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days
-0.5
N.D.
N.D.
N.D.
N.D.
stress
R2A with m-arsenite 0.8 mM
-0.5
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.4
N.D.
N.D.
N.D.
N.D.
stress
R2A with Manganese (II) chloride tetrahydrate 5 mM
-0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days
-0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
-0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days
-0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.4
N.D.
N.D.
N.D.
N.D.
lb_arabidopsis_leaf
LB_arabidopsis_leaf
-0.4
N.D.
N.D.
N.D.
N.D.
lb_arabidopsis_leaf
LB_arabidopsis_leaf
-0.3
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
-0.3
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.3
N.D.
N.D.
N.D.
N.D.
stress
R2A with vanadium chloride 0.08 mM
-0.3
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.3
N.D.
N.D.
N.D.
N.D.
no phage
P2L5
+0.3
N.D.
N.D.
N.D.
N.D.
carbon source
N-alpha-Acetyl-L-glutamate (C)
+0.3
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.4
N.D.
N.D.
N.D.
N.D.
phage
AgroPhage_F10
+0.4
N.D.
N.D.
N.D.
N.D.
lb
LB
+0.4
N.D.
N.D.
N.D.
N.D.
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.4
N.D.
N.D.
N.D.
N.D.
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