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Cofit
Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Number of genes on each side:
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500 nt
Atu0607 and Atu0608 are separated by 250 nucleotides
Atu0608 and Atu0609 are separated by 151 nucleotides
Atu0609 and Atu0610 are separated by 81 nucleotides
Atu0610 and Atu0611 are separated by 11 nucleotides
Atu0607: Atu0607 - isocitrate lyase, at 593,283 to 594,572
Atu0607
Atu0608: Atu0608 - transcriptional regulator, at 594,823 to 596,238
Atu0608
Atu0609: Atu0609 - ABC transporter, substrate binding protein (putrescine), at 596,390 to 597,487
Atu0609
Atu0610: Atu0610 - ABC transporter, nucleotide binding/ATPase protein, at 597,569 to 598,726
Atu0610
Atu0611: Atu0611 - ABC transporter, membrane spanning protein, at 598,738 to 599,646
Atu0611
Group
Condition
Atu0607
Atu0608
Atu0609
Atu0610
Atu0611
carbon source
Beta-alanine (C)
-5.9
-6.2
-0.2
+0.1
-0.0
carbon source
Glutaric (C)
-5.8
-5.7
-0.2
-0.2
-0.2
carbon source
Glutaric (C)
-5.3
-5.8
-0.1
+0.0
-0.1
carbon source
Beta-alanine (C)
-5.8
-5.2
-0.2
-0.0
-0.0
carbon source
acetate (C)
-5.1
-5.1
-0.3
+0.0
-0.5
carbon source
p-Coumaric (C)
-5.3
-4.9
-0.3
-0.2
-0.2
carbon source
p-Coumaric (C)
-4.7
-5.0
-0.1
-0.1
-0.5
carbon source
Phloretic Acid (C)
-4.6
-5.5
+0.0
-0.1
+0.0
carbon source
Ethyl benzoate (C)
-5.3
-4.9
-0.1
-0.1
+0.1
carbon source
acetate (C)
-4.5
-4.7
-0.2
-0.0
-0.2
carbon source
3-aminobenzoate (C)
-4.9
-4.8
+0.0
+0.1
+0.1
carbon source
1,5-Pentanediol (C)
-4.5
-4.8
+0.2
-0.2
-0.2
carbon source
1,5-Pentanediol (C)
-4.7
-4.9
+0.2
+0.0
-0.0
carbon source
Adipic (C)
-4.7
-4.5
+0.1
-0.2
-0.1
carbon source
cholate (C)
-4.6
-4.6
+0.0
-0.0
+0.1
carbon source
Ferulic Acid (C)
-4.4
-4.6
+0.1
+0.0
-0.2
carbon source
Adipic (C)
-4.7
-4.7
+0.1
-0.0
+0.3
carbon source
Phloretic Acid (C)
-4.2
-4.2
-0.1
-0.2
-0.1
carbon source
3-aminobenzoate (C)
-4.3
-4.5
+0.1
-0.1
+0.1
carbon source
anthranilamide (C)
-4.0
-4.4
-0.1
-0.2
+0.0
carbon source
4-Aminobutyric (C)
-3.9
-4.3
-0.1
-0.2
-0.2
carbon source
Ethyl benzoate (C)
-4.3
-4.4
+0.0
-0.1
+0.2
carbon source
cholate (C)
-4.1
-4.6
-0.0
-0.1
+0.3
carbon source
N-alpha-Acetyl-L-glutamate (C)
-4.5
-4.1
+0.1
-0.1
+0.1
carbon source
N-alpha-Acetyl-L-glutamate (C)
-4.3
-4.1
+0.0
-0.1
+0.4
carbon source
4-Aminobutyric (C)
-3.9
-3.7
-0.0
-0.2
-0.2
carbon source
anthranilamide (C)
-3.8
-3.7
+0.1
+0.0
+0.3
carbon source
methyl-beta-L-arabinopyranoside (C)
-3.4
-3.9
+0.1
-0.0
+0.2
carbon source
sarcosine (C)
-2.9
-3.8
+0.0
+0.1
-0.3
carbon source
Ferulic Acid (C)
-3.1
-3.3
+0.1
+0.1
+0.1
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