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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu0575 and Atu0576 are separated by 3 nucleotides
Atu0576 and Atu0577 are separated by 34 nucleotides
Atu0577 and Atu0578 overlap by 4 nucleotides
Atu0578 and Atu0579 overlap by 10 nucleotides
Atu0575: Atu0575 - flagellar hook associated protein, at 560,238 to 561,716
Atu0575
Atu0576: Atu0576 - flagellar hook-associated protein, at 561,720 to 562,823
Atu0576
Atu0577: Atu0577 - FLAF protein, at 562,858 to 563,202
Atu0577
Atu0578: Atu0578 - FlbT post-transcriptional regulator of flagellin, at 563,199 to 563,648
Atu0578
Atu0579: Atu0579 - hook formation protein, at 563,639 to 564,112
Atu0579
Group
Condition
Atu0575
Atu0576
Atu0577
Atu0578
Atu0579
stress
R2A with Vancomycin 0.009 mM
-0.8
-2.8
-1.7
-1.1
-2.0
stress
R2A with Vancomycin 0.009 mM
-1.0
-2.3
-1.6
-1.0
-2.1
stress
R2A with sodium fluoride 0.2 mM
+0.9
+1.0
+1.1
+0.6
+1.1
stress
R2A with Neomycin 0.002 mM
+0.9
+0.9
+1.0
+1.0
+1.0
r2a_control
R2A control
+0.9
+0.9
+1.0
+0.9
+1.1
stress
R2A with Cobalt chloride 0.02 mM
+0.8
+0.9
+1.2
+0.9
+1.0
stress
R2A with Cesium chloride 1.75 mM
+1.0
+0.9
+0.9
+0.9
+1.1
stress
R2A with silver chloride 5 mM
+1.0
+1.0
+1.0
+0.9
+0.9
r2a_control
R2A control
+0.9
+1.0
+1.3
+0.8
+1.1
carbon source
D-Galacturonic Acid (C)
+1.1
+1.0
+0.9
+1.1
+1.0
carbon source
D-Galacturonic Acid (C)
+1.1
+0.9
+0.9
+0.8
+1.4
stress
R2A with mercury (II) chloride 0.002 mM
+1.1
+1.0
+1.0
+1.1
+1.1
stress
R2A with Gallium(III) chloride 0.02 mM
+1.0
+1.1
+1.2
+0.8
+1.2
stress
R2A with Rifampicin 0.0007 mM
+1.0
+1.1
+1.1
+1.1
+1.0
stress
R2A with Oxytetracycline 0.0002 mM
+1.1
+1.1
+1.2
+1.0
+1.1
r2a_control
R2A control
+1.1
+1.1
+0.9
+1.1
+1.1
phage
AgroPhage_B01
+1.4
+1.3
+1.2
+1.3
+1.3
stress
R2A with Cobalt chloride 0.02 mM
+1.4
+1.4
+1.1
+1.4
+1.7
phage
AgroPhage_H04
+1.9
+1.5
+1.3
+1.7
+1.7
phage
AgroPhage_B07
+1.8
+1.7
+1.5
+1.5
+1.6
phage
Phage 95.3 + bacteria
+1.5
+1.8
+1.7
+1.8
+1.9
phage
Phage 95.3 + bacteria
+1.7
+1.7
+1.8
+1.7
+1.9
phage
Phage 95.3 + bacteria
+1.6
+1.7
+2.1
+1.8
+1.8
phage
AgroPhage_H10
+1.8
+1.8
+1.8
+1.8
+1.8
phage
AgroPhage_F04
+5.6
+5.5
+5.6
+5.3
+5.5
phage
AgroPhage_D10
+6.0
+6.0
+6.0
+5.7
+6.0
phage
AgroPhage_D04
+6.2
+6.2
+6.0
+6.0
+6.2
phage
AgroPhage_F10
+6.5
+6.4
+6.4
+6.3
+6.5
phage
AgroPhage_E04
+6.8
+6.8
+6.7
+6.5
+6.7
phage
AgroPhage_E10
+7.7
+7.7
+7.5
+7.3
+7.5
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