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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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500 nt
Atu0563 and Atu0564 are separated by 125 nucleotides
Atu0564 and Atu0565 are separated by 5 nucleotides
Atu0565 and Atu0566 are separated by 80 nucleotides
Atu0566 and Atu0567 are separated by 14 nucleotides
Atu0563: Atu0563 - flagellar motor switch protein FliG, at 548,213 to 549,256
Atu0563
Atu0564: Atu0564 - flagellar biosynthetic protein, at 549,382 to 550,464
Atu0564
Atu0565: Atu0565 - hypothetical protein, at 550,470 to 550,907
Atu0565
Atu0566: Atu0566 - hypothetical protein, at 550,988 to 551,200
Atu0566
Atu0567: Atu0567 - flagellin protein FlaD, at 551,215 to 552,507
Atu0567
Group
Condition
Atu0563
Atu0564
Atu0565
Atu0566
Atu0567
nophagecontrol
No phage control
+0.0
+0.1
+0.4
-3.9
-0.0
stress
Erythromycin 12.5 ug/mL
+0.6
+0.5
-1.1
-0.9
+0.2
carbon source
D-Sorbitol (C)
+1.2
+1.0
-0.2
-1.0
-0.0
r2a_control
R2A control
+1.2
+1.3
-0.5
-0.7
+0.2
carbon source
D-Galacturonic Acid (C)
+1.4
+1.4
-0.1
-0.5
+0.1
phage
Phage 95.3 + bacteria
+2.0
+1.8
-0.8
-0.4
-0.0
phage
AgroPhage_B01
+1.5
+1.4
-0.4
-0.1
+0.2
phage
AgroPhage_H04
+1.8
+1.9
-0.4
-0.4
-0.2
phage
Phage 95.3 + bacteria
+1.9
+1.8
-0.9
-0.2
+0.0
phage
Phage 95.3 + bacteria
+2.0
+1.8
-0.8
-0.2
-0.0
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.2
-0.2
+0.6
+2.5
+0.3
phage
AgroPhage_B07
+2.0
+1.8
-0.6
+0.0
+0.3
stress
R2A with Cobalt chloride 0.02 mM
+1.5
+1.7
-0.2
+0.5
+0.2
phage
AgroPhage_H10
+1.9
+2.1
-0.3
+0.0
+0.0
Atjh10
+4.0
+4.1
-0.4
+0.4
+0.2
Atjh2
+4.8
+4.8
-1.0
+0.2
+0.2
Atjh2
+4.2
+4.3
+0.3
+0.6
+0.5
Atjh2
+4.7
+4.8
+0.1
+0.4
+0.3
Atjh15
+5.3
+5.3
+0.3
+0.3
+0.0
phage
AgroPhage_F04
+5.6
+5.6
+0.2
-0.4
+0.2
Atjh10
+5.1
+5.2
-0.2
+1.2
+0.5
Atjh10
+4.9
+4.9
+0.2
+1.5
+0.5
Atjh2
+5.2
+5.3
+0.5
+0.7
+0.6
phage
AgroPhage_D04
+6.4
+6.2
-1.0
+0.7
-0.0
phage
AgroPhage_F10
+6.8
+6.6
-1.1
+0.4
-0.1
phage
AgroPhage_D10
+6.1
+6.2
-1.1
+1.3
+0.1
phage
AgroPhage_E04
+6.9
+6.9
-0.3
-0.4
+0.0
Atjh15
+6.1
+6.2
+0.4
+0.3
+0.3
Atjh14
+7.5
+7.6
-0.4
-1.0
+0.2
phage
AgroPhage_E10
+7.8
+7.7
+0.1
+1.6
-0.1
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