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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu0543 and Atu0544 are separated by 25 nucleotides
Atu0544 and Atu0545 are separated by 123 nucleotides
Atu0545 and Atu0546 are separated by 371 nucleotides
Atu0546 and Atu0547 overlap by 4 nucleotides
Atu0543: Atu0543 - flaB, at 533,119 to 534,081
Atu0543
Atu0544: Atu0544 - hypothetical protein, at 534,107 to 534,364
Atu0544
Atu0545: Atu0545 - flagella associated protein, at 534,488 to 535,408
Atu0545
Atu0546: Atu0546 - flagellar biosynthetic protein, at 535,780 to 536,517
Atu0546
Atu0547: Atu0547 - flagellar protein, at 536,514 to 537,014
Atu0547
Group
Condition
Atu0543
Atu0544
Atu0545
Atu0546
Atu0547
stress
R2A with Lithium chloride 900 mM
+0.1
-3.5
+0.1
+0.2
+0.1
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.2
-3.2
-0.1
+0.1
+0.5
stress
R2A with Vancomycin 0.009 mM
-0.8
-1.8
-0.6
+1.6
-0.6
stress
R2A with silver chloride 5 mM
+0.3
-0.3
+1.2
+0.9
+1.4
r2a_control
R2A control
+0.2
+0.7
+1.0
+1.1
+1.0
stress
R2A with mercury (II) chloride 0.002 mM
+0.4
-0.3
+1.3
+1.2
+1.3
r2a_control
R2A control
+0.4
+0.4
+1.2
+0.9
+1.2
r2a_control
R2A control
+0.2
+0.5
+1.1
+1.1
+1.2
stress
R2A with Oxytetracycline 0.0002 mM
+0.3
+0.1
+1.2
+1.2
+1.2
r2a_control
R2A control
+0.3
+1.0
+1.0
+0.8
+0.9
r2a_control
R2A control
+0.3
+0.4
+1.2
+1.1
+1.1
r2a_control
R2A control
+0.1
+1.0
+1.0
+0.9
+1.2
carbon source
D-Galacturonic Acid (C)
+0.3
+0.5
+1.1
+1.4
+1.1
phage
AgroPhage_B01
+0.6
-0.0
+1.2
+1.6
+1.3
phage
Phage 95.3 + bacteria
+0.4
+0.6
+0.5
+1.7
+1.6
r2a_control
R2A control
+0.2
+0.7
+1.3
+1.2
+1.4
carbon source
D-Galacturonic Acid (C)
+0.4
+1.0
+0.9
+1.3
+1.2
stress
R2A with Gallium(III) chloride 0.02 mM
+0.4
+0.7
+1.4
+1.1
+1.3
phage
Phage 95.3 + bacteria
+0.4
+0.9
+0.6
+1.9
+1.8
stress
R2A with Cobalt chloride 0.02 mM
+0.3
+0.2
+1.8
+1.6
+1.9
phage
Phage 95.3 + bacteria
+0.4
+1.2
+0.5
+1.9
+1.8
phage
AgroPhage_B07
+0.5
+0.4
+1.6
+1.8
+1.8
phage
AgroPhage_H04
+1.8
+1.2
+1.7
+1.7
+1.8
phage
AgroPhage_H10
+1.7
+1.4
+1.8
+2.1
+2.0
phage
AgroPhage_F04
+0.5
-0.1
+0.7
+5.6
+5.5
phage
AgroPhage_D10
+0.3
-0.1
+0.7
+6.1
+6.2
phage
AgroPhage_E04
+0.7
-0.7
+0.9
+6.7
+6.7
phage
AgroPhage_D04
+0.4
+1.6
+1.3
+6.2
+6.2
phage
AgroPhage_F10
+0.6
+0.9
+1.2
+6.7
+6.5
phage
AgroPhage_E10
+0.0
+1.3
+0.8
+7.6
+7.6
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