Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0538 and Atu0539 are separated by 113 nucleotidesAtu0539 and Atu0540 are separated by 102 nucleotidesAtu0540 and Atu0541 are separated by 155 nucleotidesAtu0541 and Atu0542 are separated by 188 nucleotides Atu0538: Atu0538 - hypothetical protein, at 529,302 to 529,742 Atu0538 Atu0539: Atu0539 - UDP-N-acetylglucosamine, at 529,856 to 531,148 Atu0539 Atu0540: Atu0540 - hypothetical protein, at 531,251 to 531,517 Atu0540 Atu0541: Atu0541 - tRNA-Thr, at 531,673 to 531,747 Atu0541 Atu0542: Atu0542 - flagellin, at 531,936 to 532,877 Atu0542
Group Condition Atu0538 Atu0539 Atu0540 Atu0541 Atu0542
stress Streptomycin 200 ug/mL -2.6 N.D. -0.3 N.D. -0.0
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.3 N.D. -0.4 N.D. -0.3
stress R2A with Vancomycin 0.009 mM -0.9 N.D. -1.0 N.D. +0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 N.D. -1.5 N.D. +0.1
phage AgroPhage_F10 -0.7 N.D. -0.9 N.D. +0.0
stress R2A with m-arsenite 0.8 mM -1.6 N.D. +0.3 N.D. -0.2
stress R2A with Vancomycin 0.009 mM -1.0 N.D. -0.8 N.D. +0.2
stress Streptomycin 200 ug/mL -1.6 N.D. -0.1 N.D. +0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.5 N.D. +0.2 N.D. +0.1
phage AgroPhage_D10 -1.3 N.D. +0.3 N.D. -0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 N.D. +0.4 N.D. -0.5
carbon source cholate (C) -0.9 N.D. +0.3 N.D. -0.2
phage AgroPhage_A05 -0.8 N.D. +0.3 N.D. -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.0 N.D. +0.9 N.D. -0.5
stress R2A with Cesium chloride 1.75 mM -0.8 N.D. +0.5 N.D. -0.3
stress R2A with Tetracycline 0.002 mM -0.9 N.D. +0.5 N.D. -0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.0 N.D. +0.5 N.D. +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 N.D. +0.9 N.D. -0.5
carbon source 1,5-Pentanediol (C) -0.8 N.D. +0.7 N.D. -0.1
pH R2A pH 5.5 -0.8 N.D. +0.5 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 N.D. -0.8 N.D. +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 N.D. +1.3 N.D. -0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.2 N.D. -0.2 N.D. -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 N.D. +1.3 N.D. +0.2
Atjh2 +0.5 N.D. +0.8 N.D. -0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 N.D. +1.0 N.D. -0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 N.D. +1.1 N.D. +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.1 N.D. +0.6 N.D. +0.1
nitrogen source DL-2-Aminobutyric (N) +0.3 N.D. +1.3 N.D. +0.6
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 N.D. +1.8 N.D. +0.2
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