Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0529 and Atu0530 are separated by 330 nucleotidesAtu0530 and Atu0531 are separated by 12 nucleotidesAtu0531 and Atu0532 overlap by 17 nucleotidesAtu0532 and Atu0533 are separated by 72 nucleotides Atu0529: Atu0529 - aspartate transaminase, at 522,122 to 523,288 Atu0529 Atu0530: Atu0530 - UDP-galactose 4-epimerase, at 523,619 to 524,650 Atu0530 Atu0531: Atu0531 - hypothetical protein, at 524,663 to 525,415 Atu0531 Atu0532: Atu0532 - hypothetical protein, at 525,399 to 525,809 Atu0532 Atu0533: Atu0533 - putative inhibitor of septum formation, at 525,882 to 526,505 Atu0533
Group Condition Atu0529 Atu0530 Atu0531 Atu0532 Atu0533
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.1 +0.1 -0.3 -3.7
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.6 +0.5 -0.4 -4.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.0 +0.5 -0.5 -3.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -0.8 -0.1 +0.0 -2.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.5 +0.6 -0.1 -2.5
stress methyl jasmonate 5 mM +0.1 +0.3 -0.0 +0.1 -3.1
carbon source L-ascorbate (C) -0.0 -0.1 +0.2 -0.3 -2.4
stress R2A with hypochlorite 6.25 mM -0.1 +0.1 -0.5 -0.0 -2.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.1 +0.2 +0.0 -2.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 +0.6 +0.7 -0.4 -3.8
stress D(+)-Carvone 5 mM +0.0 +0.4 -0.1 +0.2 -2.3
stress methyl jasmonate 5 mM -0.0 +0.3 +0.1 -0.1 -2.1
lb_sorghum btx 430 LB_Sorghum Btx 430 +0.1 -0.3 +0.1 +0.2 -1.9
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 -0.4 -0.0 -1.8
lb_sorghum f72 f505 LB_Sorghum F72 F505 +0.0 -0.1 +0.2 +0.2 -2.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.2 +0.5 -0.1 -2.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.4 +0.4 +0.3 -2.3
lb_tobacco_leaf LB_Tobacco_Leaf -0.3 +0.1 +0.5 -0.1 -1.7
phage AgroPhage_B07 +0.1 +0.0 +0.4 +0.1 -2.0
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.6 +1.1 -0.4 -0.8
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.2 +0.2 +0.5 -1.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.3 +0.5 +0.3 -1.8
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.7 +0.5 -1.1 +1.2
nitrogen source DL-2-Aminobutyric (N) +0.1 +1.7 -1.0 -0.2 -1.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.7 +1.5 -0.5 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +1.6 -0.1 -0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +1.8 +0.3 -0.1 -0.4
carbon source sarcosine (C) +0.1 -0.2 +0.0 +0.0 +2.6
stress R2A with Vancomycin 0.009 mM -0.5 +0.2 -0.3 -0.1 +3.7
stress R2A with Vancomycin 0.009 mM -0.1 +0.3 -0.0 -0.5 +4.7
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