Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0501 and Atu0502 are separated by 38 nucleotidesAtu0502 and Atu0503 are separated by 184 nucleotidesAtu0503 and Atu0504 are separated by 156 nucleotidesAtu0504 and Atu8010 are separated by 41 nucleotides Atu0501: Atu0501 - acyl-CoA dehydrogenase, at 489,997 to 491,793 Atu0501 Atu0502: Atu0502 - acetyl-CoA acetyltransferase, at 491,832 to 493,040 Atu0502 Atu0503: Atu0503 - enoyl-CoA hydratase, at 493,225 to 495,441 Atu0503 Atu0504: Atu0504 - hypothetical protein, at 495,598 to 496,029 Atu0504 Atu8010: Atu8010 - hypothetical protein, at 496,071 to 496,277 Atu8010
Group Condition Atu0501 Atu0502 Atu0503 Atu0504 Atu8010
carbon source NAG (C) -5.6 -4.6 -5.8 +0.2 -0.3
carbon source NAG (C) -5.8 -4.3 -6.0 -0.1 +0.1
carbon source p-Coumaric (C) -5.4 -4.6 -4.7 +0.1 -0.2
carbon source p-Coumaric (C) -5.2 -4.6 -4.5 -0.1 -0.2
carbon source Ethyl benzoate (C) -4.4 -4.2 -4.7 +0.1 +0.1
carbon source Ethyl benzoate (C) -4.4 -3.9 -4.6 -0.0 +0.2
carbon source L-Galactose (C) -3.6 -3.8 -4.1 -0.0 -0.1
carbon source Xylobiose (C) -3.5 -3.9 -3.7 -0.0 -0.1
carbon source L-Galactose (C) -3.8 -4.0 -3.6 +0.2 +0.3
carbon source Ferulic Acid (C) -3.7 -3.5 -3.4 +0.3 -0.4
carbon source methyl-beta-D-xylopyranoside (C) -3.5 -3.9 -3.3 +0.1 -0.2
carbon source L-Sorbose (C) -3.1 -3.5 -3.7 -0.2 -0.2
carbon source Ferulic Acid (C) -3.7 -2.9 -3.5 -0.1 -0.0
carbon source L-Sorbose (C) -3.0 -3.6 -3.8 +0.1 +0.1
carbon source Melibiose (C) -3.0 -3.0 -3.3 +0.1 -0.3
carbon source m-Inositol (C) -2.7 -3.2 -3.0 -0.2 -0.5
carbon source D-Quinic (C) -3.0 -3.3 -2.9 +0.0 -0.4
carbon source Melibiose (C) -3.2 -3.1 -3.1 -0.1 -0.0
carbon source methyl-beta-D-xylopyranoside (C) -3.3 -2.7 -3.1 -0.3 -0.2
carbon source m-Inositol (C) -2.7 -3.3 -3.0 +0.1 +0.1
carbon source Stachyose (C) -2.9 -2.8 -2.7 +0.1 -0.2
carbon source Xylobiose (C) -2.6 -2.8 -2.7 +0.0 -0.1
carbon source Stachyose (C) -2.4 -2.8 -2.7 +0.2 -0.4
carbon source D-Quinic (C) -3.0 -2.4 -2.9 +0.2 +0.4
carbon source Glutaric (C) -2.3 -2.3 -2.0 +0.2 -0.3
carbon source Ribitol (C) -1.7 -2.3 -1.9 -0.4 -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.8 -2.8 -1.4 +0.6 +0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.6 -1.6 -1.4 +0.6 +1.2
stress R2A with Vancomycin 0.009 mM +3.5 +6.4 +6.6 -0.3 +0.4
stress R2A with Vancomycin 0.009 mM +4.0 +7.6 +7.8 -0.1 -0.2
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