Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0478 and Atu0479 are separated by 559 nucleotidesAtu0479 and Atu0480 are separated by 27 nucleotidesAtu0480 and Atu0481 are separated by 377 nucleotidesAtu0481 and Atu0482 are separated by 26 nucleotides Atu0478: Atu0478 - glycosyltransferase, at 465,635 to 467,182 Atu0478 Atu0479: Atu0479 - ABC transporter, substrate binding protein (amino acid), at 467,742 to 468,503 Atu0479 Atu0480: Atu0480 - polysaccharide biosynthesis protein, at 468,531 to 469,733 Atu0480 Atu0481: Atu0481 - exopolysaccharide production protein, at 470,111 to 471,406 Atu0481 Atu0482: Atu0482 - polysaccharide deacetylase, at 471,433 to 472,185 Atu0482
Group Condition Atu0478 Atu0479 Atu0480 Atu0481 Atu0482
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 -0.3 -0.9 -0.8 -1.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -0.3 -0.9 -0.6 -1.7
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -2.7 -0.2 +0.2 -0.5
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -1.2 -0.7 -0.8 -0.6
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -1.3 -1.0 -0.6 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -0.1 -0.7 -0.5 -1.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.1 -0.9 -0.6 -1.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 -0.2 -0.7 -0.7 -1.2
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -1.0 -1.0 -0.5 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -1.7 -0.2 +0.1 -1.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +0.0 -0.8 -0.3 -1.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -0.0 -0.6 -0.5 -1.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -0.3 -0.8 -0.5 -0.9
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.9 -0.9 -0.4 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 +0.0 -0.5 -0.6 -1.5
carbon source L-ascorbate (C) -0.0 -1.9 +0.1 -0.1 -0.6
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -1.0 -0.7 -0.6 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.0 +0.1 -0.7 -0.6 -1.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -2.1 -0.2 +0.2 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +0.5 -0.7 -0.4 -1.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -1.9 -0.1 +0.2 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.2 -0.5 -0.3 -1.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -1.0 +0.8 +0.9 +0.4
phage AgroPhage_F04 -0.0 +1.3 +0.7 -0.2 -0.6
phage AgroPhage_D10 -0.2 +1.5 +0.8 -0.4 -0.3
nitrogen source DL-2-Aminobutyric (N) +0.0 -0.4 +0.6 +0.9 +0.9
carbon source sarcosine (C) -0.0 +2.4 +0.2 -0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.1 +1.2 +0.3 +0.9
stress R2A with Vancomycin 0.009 mM +0.1 +4.0 +0.1 -0.0 +0.0
stress R2A with Vancomycin 0.009 mM -0.1 +5.0 +0.2 -0.0 +0.3
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