Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0477 and Atu0478 are separated by 211 nucleotidesAtu0478 and Atu0479 are separated by 559 nucleotidesAtu0479 and Atu0480 are separated by 27 nucleotidesAtu0480 and Atu0481 are separated by 377 nucleotides Atu0477: Atu0477 - hypothetical protein, at 465,100 to 465,423 Atu0477 Atu0478: Atu0478 - glycosyltransferase, at 465,635 to 467,182 Atu0478 Atu0479: Atu0479 - ABC transporter, substrate binding protein (amino acid), at 467,742 to 468,503 Atu0479 Atu0480: Atu0480 - polysaccharide biosynthesis protein, at 468,531 to 469,733 Atu0480 Atu0481: Atu0481 - exopolysaccharide production protein, at 470,111 to 471,406 Atu0481
Group Condition Atu0477 Atu0478 Atu0479 Atu0480 Atu0481
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.9 -0.2 -1.3 -1.0 -0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -2.5 +0.0 -1.2 +0.1 +0.3
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.1 -1.2 -0.7 -0.8
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 -2.7 -0.2 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 +0.1 -1.7 -0.2 +0.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.1 -1.0 -1.0 -0.5
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.8 +0.3 -0.9 -0.0 -0.0
stress methyl jasmonate 5 mM -0.5 -0.1 -2.0 +0.1 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.4 -0.1 -1.0 +0.1 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -2.7 -0.1 -1.0 +0.8 +0.9
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -0.2 -1.3 -0.1 +0.5
stress R2A with hypochlorite 6.25 mM +0.1 -0.1 -2.1 +0.1 +0.2
carbon source L-ascorbate (C) -0.3 +0.0 -1.9 +0.4 +0.1
carbon source L-ascorbate (C) +0.6 -0.0 -1.9 +0.1 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.0 -0.2 -1.9 -0.1 +0.2
phage Phage 99.2 + bacteria +0.9 -0.1 -0.7 -0.7 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.2 -1.6 -0.2 +0.5
stress methyl jasmonate 5 mM +0.8 -0.0 -1.7 +0.2 +0.2
carbon source D-Xylose (C) -1.0 +0.0 -0.6 +0.7 +0.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.1 -0.2 -0.6 -0.7 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.7 +0.0 +0.0 -0.8 -0.3
carbon source D-Saccharic potassium salt (C) +1.7 -0.1 -0.8 -0.0 +0.2
carbon source sarcosine (C) -0.0 -0.0 +2.4 +0.2 -0.2
phage AgroPhage_D04 +0.7 -0.1 +1.2 +0.6 +0.1
phage AgroPhage_E04 +0.9 -0.1 +1.3 +0.3 +0.1
phage AgroPhage_F10 +0.8 +0.1 +1.1 +0.6 +0.0
phage AgroPhage_D10 +0.9 -0.2 +1.5 +0.8 -0.4
stress R2A with Vancomycin 0.009 mM -2.4 -0.1 +5.0 +0.2 -0.0
stress R2A with Vancomycin 0.009 mM -0.4 +0.1 +4.0 +0.1 -0.0
nitrogen source DL-2-Aminobutyric (N) +3.1 +0.0 -0.4 +0.6 +0.9
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