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Cofit
Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu0436 and Atu0437 overlap by 1 nucleotides
Atu0437 and Atu0438 are separated by 1 nucleotides
Atu0438 and Atu8122 are separated by 282 nucleotides
Atu8122 and Atu8123 are separated by 1049 nucleotides
Atu0436: Atu0436 - hypothetical protein, at 430,993 to 433,149
Atu0436
Atu0437: Atu0437 - hypothetical protein, at 433,149 to 433,829
Atu0437
Atu0438: Atu0438 - phage-related integrase, at 433,831 to 434,859
Atu0438
Atu8122: Atu8122 - hypothetical protein, at 435,142 to 436,047
Atu8122
Atu8123: Atu8123 - hypothetical protein, at 437,097 to 437,330
Atu8123
Group
Condition
Atu0436
Atu0437
Atu0438
Atu8122
Atu8123
Atjh14
-1.9
-1.4
-1.0
-0.3
+0.1
Atjh2
-1.4
-1.4
-0.6
-0.7
-0.3
phage
phage 100.3
-1.1
-1.4
-0.4
-0.2
-0.3
phage
phage 100.3
-1.2
-1.4
-0.4
-0.3
-0.1
Atjh2
-1.2
-1.4
-0.4
-0.3
-0.1
phage
phage 99.2
-1.1
-1.2
-0.3
-0.2
-0.4
Atjh2
-1.2
-0.9
-0.5
-0.3
-0.1
phage
phage 99.1
-1.0
-1.2
-0.2
-0.4
-0.2
No phage control
-1.2
-0.9
-0.4
-0.3
-0.1
phage
phage 99.2
-1.1
-1.0
-0.3
-0.0
-0.5
phage
phage 95.1
-0.8
-1.2
-0.3
-0.5
-0.0
phage
Phage 95.2 + bacteria
-0.8
-1.0
-0.2
-0.3
-0.6
Atjh2
-1.1
-0.9
-0.3
-0.3
-0.2
phage
Phage 100.1 + bacteria
-0.9
-0.9
-0.3
-0.3
-0.3
phage
Phage 95.1 + bacteria
-0.9
-1.0
-0.4
-0.2
-0.3
phage
Phage 99.2 + bacteria
-1.0
-0.9
-0.2
-0.1
-0.5
phage
Phage 97.2 + bacteria
-0.9
-1.0
-0.2
-0.4
-0.1
phage
Phage 95.2 + bacteria
-1.0
-0.9
-0.3
-0.2
-0.1
phage
phage 100.2
-1.0
-1.1
-0.4
+0.1
-0.0
phage
Phage 97.2 + bacteria
-1.0
-0.8
-0.3
-0.1
-0.3
phage
Phage 99.2 + bacteria
-1.0
-0.8
-0.3
-0.2
-0.2
phage
Phage 97.3 + bacteria
-0.9
-0.9
-0.2
-0.1
-0.4
Atjh10
-0.8
-0.6
-0.2
-0.2
+0.8
nophagecontrol
No phage control
+1.0
+1.1
+0.2
-0.4
-0.3
nitrogen source
DL-2-Aminobutyric (N)
+0.5
-0.5
+0.5
+0.9
+0.8
stress
Pyrogallol 0.5 mM
+0.5
+0.6
+0.5
+0.5
+0.6
no phage
P3L5
+0.8
+0.6
+0.7
+0.7
+0.3
phage
AgroPhage_A01
+1.1
+1.1
+0.6
+0.8
+0.6
stress
Acetovanillone 5 mM
+1.0
+1.1
+0.9
+1.0
+0.5
stress
Acetovanillone 5 mM
+1.4
+1.2
+1.0
+1.0
+0.8
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