Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0408 and Atu0409 are separated by 179 nucleotidesAtu0409 and Atu0410 are separated by 127 nucleotidesAtu0410 and Atu8119 are separated by 114 nucleotidesAtu8119 and Atu8120 are separated by 92 nucleotides Atu0408: Atu0408 - ABC transporter, membrane spanning protein, at 404,550 to 406,226 Atu0408 Atu0409: Atu0409 - ferrichrome iron receptor, at 406,406 to 408,595 Atu0409 Atu0410: Atu0410 - transcriptional regulator, AraC family, at 408,723 to 409,586 Atu0410 Atu8119: Atu8119 - hypothetical protein, at 409,701 to 410,108 Atu8119 Atu8120: Atu8120 - hypothetical protein, at 410,201 to 410,443 Atu8120
Group Condition Atu0408 Atu0409 Atu0410 Atu8119 Atu8120
phage AgroPhage_C04 -0.4 -0.2 -0.6 -0.3 -0.3
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.1 -0.5 -0.3 -0.6
phage AgroPhage_B01 -0.2 -0.2 -0.2 -0.5 -0.2
phage AgroPhage_A05 -0.2 -0.1 -0.4 -0.2 +0.2
Atjh14 +0.1 -0.1 -0.5 +0.4 -0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.2 -0.1 -0.2 +0.5
nophagecontrol No phage control -0.2 +0.0 -0.2 -0.2 +0.5
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 -0.2 +0.2 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.2 +0.1 +0.3 -0.3 +0.3
nitrogen source DL-2-Aminobutyric (N) +0.2 +0.4 -0.6 +0.0 +0.4
stress R2A with Cefoxitin 0.008 mM +0.1 +0.2 -0.2 -0.2 +0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 -0.2 -0.2 +0.7
stress R2A with Nickel (II) chloride 0.05 mM +0.2 -0.0 -0.2 -0.1 +0.7
stress R2A with Aluminum chloride 0.3 mM +0.1 +0.1 -0.3 +0.1 +0.6
stress R2A with Lithium chloride 900 mM +0.1 +0.1 -0.2 -0.1 +0.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.1 +0.0 +0.1 +0.8
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.3 -0.1 +0.4 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 -0.0 -0.2 +0.1 +0.3 +0.6
stress R2A with Chlorite 0.2 mM +0.4 +0.1 -0.1 -0.0 +0.5
stress R2A with hypochlorite 6.25 mM -0.2 +0.2 -0.2 +0.3 +0.8
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 -0.1 +0.2 -0.1 +0.5
stress R2A with Azlocillin 0.2 mM +0.2 +0.2 -0.1 +0.2 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -0.1 +0.4 +0.2 +0.8
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +0.0 +0.0 +0.0 +1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 +0.0 -0.0 +0.5 +0.7
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -0.1 +0.3 -0.0 +1.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.0 -0.0 +0.4 +0.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.1 +0.1 +0.2 +1.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.2 +0.6 +0.2 +1.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.2 +0.1 +0.1 +1.3
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