Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0389 and Atu0390 are separated by 180 nucleotidesAtu0390 and Atu0391 are separated by 331 nucleotidesAtu0391 and Atu0392 overlap by 4 nucleotidesAtu0392 and Atu0393 overlap by 1 nucleotides Atu0389: Atu0389 - tRNA-Arg, at 382,707 to 382,783 Atu0389 Atu0390: Atu0390 - ubiquinone/menaquinone biosynthesis methyltransferase, at 382,964 to 383,776 Atu0390 Atu0391: Atu0391 - ABC transporter, nucleotide binding/ATPase protein, at 384,108 to 385,139 Atu0391 Atu0392: Atu0392 - ABC transporter, membrane spanning protein, at 385,136 to 386,062 Atu0392 Atu0393: Atu0393 - ABC transporter, membrane spanning protein, at 386,062 to 386,883 Atu0393
Group Condition Atu0389 Atu0390 Atu0391 Atu0392 Atu0393
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 -0.1 -0.4 -0.4
phage AgroPhage_B01 N.D. -0.7 +0.1 -0.4 -0.3
nophagecontrol No phage control N.D. -0.3 -0.0 -0.4 -0.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.3 -0.1 -0.4 -0.6
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 +0.1 +0.1 -0.4
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.7 -0.2 +0.1 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.3 +0.4 -0.1 -0.4
no phage P1L5 N.D. -0.4 -0.1 +0.4 -0.3
phage phage 95.1 N.D. -0.7 +0.3 -0.2 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 +0.0 +0.4 -0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.5 -0.3 -0.1 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.2 +0.1 +0.3 -0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.5 +0.2 -0.3 -0.3
stress R2A with Vancomycin 0.009 mM N.D. +0.3 +0.3 +0.2 -0.5
phage AgroPhage_H04 N.D. -0.2 +0.3 -0.4 +0.7
phage AgroPhage_E10 N.D. +0.0 +0.3 -0.4 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.4 -0.0 +0.1 +0.7
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.5 -0.1 +0.3 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.5 +0.3 -0.1 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. +0.3 +0.1 -0.3 +0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. +0.6 -0.1 -0.2 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.0 +0.4 -0.2 +0.7
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.3 +0.4 -0.4 +0.6
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 +0.5 +0.0 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.4 +0.6 -0.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.5 +0.2 +0.2 +0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.8 +0.4 +0.2 -0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.6 +0.1 +0.2 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 +0.3 +0.2 +1.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.7 +0.5 -0.1 +1.1
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