Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0337 and Atu0338 are separated by 26 nucleotidesAtu0338 and Atu0339 are separated by 51 nucleotidesAtu0339 and Atu0340 are separated by 297 nucleotidesAtu0340 and Atu0341 overlap by 4 nucleotides Atu0337: Atu0337 - proteinase IV, at 329,164 to 330,117 Atu0337 Atu0338: Atu0338 - integration host factor, beta subunit, at 330,144 to 330,446 Atu0338 Atu0339: Atu0339 - hypothetical protein, at 330,498 to 330,854 Atu0339 Atu0340: Atu0340 - SAM dependent methyltransferase, at 331,152 to 332,081 Atu0340 Atu0341: Atu0341 - rRNA methylase, at 332,078 to 332,938 Atu0341
Group Condition Atu0337 Atu0338 Atu0339 Atu0340 Atu0341
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 N.D. -0.3 -2.9 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 N.D. +0.4 -2.5 N.D.
phage AgroPhage_F10 -0.1 N.D. -1.4 -1.0 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 N.D. -0.9 -1.0 N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 N.D. -0.4 -1.5 N.D.
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 N.D. -1.6 -0.4 N.D.
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 N.D. -1.1 -1.2 N.D.
pH R2A pH 5.5 +0.2 N.D. +0.1 -2.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.0 N.D. -0.5 -1.6 N.D.
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.3 N.D. -0.1 -1.5 N.D.
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.0 N.D. -0.6 -1.2 N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 N.D. -0.4 -1.0 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 N.D. -1.0 -0.8 N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 N.D. -0.9 -1.1 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.1 N.D. -0.9 -0.8 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 N.D. +0.9 -1.5 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 N.D. +0.6 -1.5 N.D.
phage AgroPhage_B07 -0.1 N.D. +0.4 -1.4 N.D.
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 N.D. +0.6 -1.9 N.D.
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 N.D. +0.7 -1.2 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 N.D. +0.7 -1.1 N.D.
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 N.D. +0.8 -1.0 N.D.
stress R2A with m-arsenite 0.8 mM +0.2 N.D. +1.1 -0.5 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 N.D. +1.3 -0.2 N.D.
stress Chloramphenicol 6.25 ug/mL -0.0 N.D. +0.4 +1.7 N.D.
stress Chloramphenicol 6.25 ug/mL +0.2 N.D. +0.5 +1.8 N.D.
stress R2A with Vancomycin 0.009 mM +0.0 N.D. +2.7 +0.6 N.D.
stress R2A with Vancomycin 0.009 mM -0.1 N.D. +3.0 +0.6 N.D.
stress Chloramphenicol 12.5 ug/mL -0.1 N.D. +0.5 +6.6 N.D.
stress Chloramphenicol 12.5 ug/mL +0.4 N.D. +1.3 +6.3 N.D.
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