Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0335 and Atu0337 are separated by 191 nucleotidesAtu0337 and Atu0338 are separated by 26 nucleotidesAtu0338 and Atu0339 are separated by 51 nucleotidesAtu0339 and Atu0340 are separated by 297 nucleotides Atu0335: Atu0335 - hypothetical protein, at 328,265 to 328,972 Atu0335 Atu0337: Atu0337 - proteinase IV, at 329,164 to 330,117 Atu0337 Atu0338: Atu0338 - integration host factor, beta subunit, at 330,144 to 330,446 Atu0338 Atu0339: Atu0339 - hypothetical protein, at 330,498 to 330,854 Atu0339 Atu0340: Atu0340 - SAM dependent methyltransferase, at 331,152 to 332,081 Atu0340
Group Condition Atu0335 Atu0337 Atu0338 Atu0339 Atu0340
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.2 N.D. -0.3 -2.9
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 N.D. +0.4 -2.5
phage AgroPhage_F10 N.D. -0.1 N.D. -1.4 -1.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 N.D. -0.9 -1.0
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.3 N.D. -0.4 -1.5
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.3 N.D. -1.6 -0.4
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.1 N.D. -1.1 -1.2
pH R2A pH 5.5 N.D. +0.2 N.D. +0.1 -2.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.0 N.D. -0.5 -1.6
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. -0.3 N.D. -0.1 -1.5
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. -0.0 N.D. -0.6 -1.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.4 N.D. -0.5 -0.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 N.D. -1.0 -0.8
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.3 N.D. -0.9 -1.2
Atjh2 N.D. -0.2 N.D. +0.1 -1.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days N.D. +0.1 N.D. -0.9 -0.8
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 N.D. +0.9 -1.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.2 N.D. +0.6 -1.5
phage AgroPhage_B07 N.D. -0.1 N.D. +0.4 -1.4
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.3 N.D. +0.6 -1.9
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.0 N.D. +0.7 -1.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.0 N.D. +0.7 -1.1
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 N.D. +0.8 -1.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.5 N.D. +1.3 -0.2
stress Chloramphenicol 6.25 ug/mL N.D. -0.0 N.D. +0.4 +1.7
stress Chloramphenicol 6.25 ug/mL N.D. +0.2 N.D. +0.5 +1.8
stress R2A with Vancomycin 0.009 mM N.D. +0.0 N.D. +2.7 +0.6
stress R2A with Vancomycin 0.009 mM N.D. -0.1 N.D. +3.0 +0.6
stress Chloramphenicol 12.5 ug/mL N.D. -0.1 N.D. +0.5 +6.6
stress Chloramphenicol 12.5 ug/mL N.D. +0.4 N.D. +1.3 +6.3
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