Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0299 and Atu0300 are separated by 96 nucleotidesAtu0300 and Atu0301 are separated by 193 nucleotidesAtu0301 and Atu0302 are separated by 264 nucleotidesAtu0302 and Atu0303 overlap by 11 nucleotides Atu0299: Atu0299 - hypothetical protein, at 292,277 to 292,873 Atu0299 Atu0300: Atu0300 - methyltransferase, at 292,970 to 293,563 Atu0300 Atu0301: Atu0301 - DNA polymerase III, beta chain, at 293,757 to 294,875 Atu0301 Atu0302: Atu0302 - tetrapyrrole methylase family protein, at 295,140 to 296,081 Atu0302 Atu0303: Atu0303 - hypothetical protein, at 296,071 to 296,439 Atu0303
Group Condition Atu0299 Atu0300 Atu0301 Atu0302 Atu0303
carbon source L-Sorbose (C) +0.1 -2.3 N.D. -0.5 -0.1
carbon source L-Sorbose (C) +0.2 -2.2 N.D. -0.5 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.1 N.D. -1.0 -0.7
carbon source Ferulic Acid (C) -0.4 -1.2 N.D. -0.3 +0.0
carbon source Ferulic Acid (C) +0.0 -1.4 N.D. -0.3 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.5 N.D. -0.8 +0.4
stress R2A with Gentamicin 0.00125 mM +0.0 +0.3 N.D. -1.3 -0.3
nitrogen source Orotic (N) +0.0 -1.6 N.D. +0.2 +0.1
carbon source D-Glucose-6-Phosphate (C) +0.2 -0.4 N.D. -0.5 -0.6
carbon source Phloretic Acid (C) -0.1 -0.7 N.D. -0.8 +0.4
carbon source pyruvate (C) +0.1 -1.1 N.D. -0.3 +0.3
nitrogen source Orotic (N) -0.4 -1.0 N.D. +0.3 +0.2
carbon source D-Glucosamine Hydrochloride (C) +0.3 -1.1 N.D. +0.2 -0.2
stress R2A with Vancomycin 0.009 mM -0.0 +2.1 N.D. -2.6 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.7 N.D. -0.3 -0.2
stress R2A with Vancomycin 0.009 mM -0.1 +2.3 N.D. -2.1 -0.5
phage AgroPhage_A05 -0.1 +0.5 N.D. +0.3 -1.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.3 N.D. -1.4 +1.3
carbon source D-Sorbitol (C) +0.6 +0.7 N.D. -0.1 -0.9
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 +0.5 N.D. -0.5 -0.2
phage Phage 99.2 + bacteria -0.4 -0.1 N.D. +0.9 +0.3
stress R2A with m-arsenite 0.8 mM -0.1 -0.1 N.D. +1.4 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +1.2 N.D. -0.0 -0.5
nophagecontrol No phage control -0.4 +0.6 N.D. +0.4 +0.3
phage Phage 100.2 + bactiera -0.3 -0.1 N.D. +1.2 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +1.3 N.D. +0.0 -0.4
stress R2A with m-arsenite 0.8 mM +0.1 -0.3 N.D. +1.2 +0.1
carbon source D-Saccharic potassium salt (C) +0.0 +1.9 N.D. -0.4 +0.2
stress R2A with Strontium chloride 750 mM +0.2 +0.9 N.D. +0.3 +0.6
carbon source D-Saccharic potassium salt (C) +0.5 +1.9 N.D. -0.3 +0.4
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