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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu0298 and Atu0299 are separated by 4 nucleotides
Atu0299 and Atu0300 are separated by 96 nucleotides
Atu0300 and Atu0301 are separated by 193 nucleotides
Atu0301 and Atu0302 are separated by 264 nucleotides
Atu0298: Atu0298 - orotidine 5, at 291,565 to 292,272
Atu0298
Atu0299: Atu0299 - hypothetical protein, at 292,277 to 292,873
Atu0299
Atu0300: Atu0300 - methyltransferase, at 292,970 to 293,563
Atu0300
Atu0301: Atu0301 - DNA polymerase III, beta chain, at 293,757 to 294,875
Atu0301
Atu0302: Atu0302 - tetrapyrrole methylase family protein, at 295,140 to 296,081
Atu0302
Group
Condition
Atu0298
Atu0299
Atu0300
Atu0301
Atu0302
carbon source
L-Sorbose (C)
-6.0
+0.2
-2.2
N.D.
-0.5
carbon source
L-Sorbose (C)
-5.7
+0.1
-2.3
N.D.
-0.5
carbon source
D-Trehalose (C)
-6.6
+0.0
-0.8
N.D.
-0.1
carbon source
D-Ribose (C)
-6.5
-0.0
-0.8
N.D.
-0.3
carbon source
Lactulose (C)
-7.0
+0.0
-0.2
N.D.
-0.3
carbon source
D-Trehalose (C)
-6.6
+0.1
-0.7
N.D.
-0.4
carbon source
D,L-Malic Acid (C)
-6.1
-0.3
-0.8
N.D.
-0.3
carbon source
Gentibiose (C)
-6.6
-0.1
-0.5
N.D.
-0.3
carbon source
Glutaric (C)
-6.5
-0.1
-0.7
N.D.
-0.1
carbon source
Sucrose (C)
-6.5
-0.0
-0.7
N.D.
-0.2
carbon source
Ribitol (C)
-7.1
+0.0
-0.2
N.D.
-0.1
carbon source
Xylitol (C)
-6.3
-0.0
-0.6
N.D.
-0.4
carbon source
D-Quinic (C)
-7.3
+0.1
-0.2
N.D.
-0.0
carbon source
D-Maltose (C)
-6.4
+0.1
-0.6
N.D.
-0.4
carbon source
Sucrose (C)
-7.0
+0.1
-0.4
N.D.
+0.1
carbon source
L-Fucose (C)
-7.0
+0.2
-0.3
N.D.
-0.0
carbon source
D-Quinic (C)
-6.9
+0.2
-0.3
N.D.
-0.2
carbon source
Maltotriose (C)
-6.7
-0.1
-0.1
N.D.
-0.3
carbon source
D-Galactose (C)
-6.8
+0.1
-0.3
N.D.
-0.1
carbon source
Ferulic Acid (C)
-5.4
+0.0
-1.4
N.D.
-0.3
carbon source
Ribitol (C)
-7.0
+0.2
+0.0
N.D.
-0.3
carbon source
methyl-beta-D-xylopyranoside (C)
-6.7
+0.1
-0.3
N.D.
+0.0
carbon source
D-Glucose-6-Phosphate (C)
-6.2
+0.2
-0.4
N.D.
-0.5
carbon source
D-Maltose (C)
-6.5
+0.3
-0.4
N.D.
-0.3
carbon source
Cellotetraose (C)
-6.8
+0.3
-0.1
N.D.
-0.2
carbon source
D-Glucuronic gamma lactone (C)
-6.6
+0.2
-0.5
N.D.
+0.1
carbon source
D-Glucose-6-Phosphate (C)
-5.9
+0.2
-0.5
N.D.
-0.4
carbon source
D-Glucosamine Hydrochloride (C)
-5.6
+0.3
-1.1
N.D.
+0.2
stress
R2A with Vancomycin 0.009 mM
-4.1
-0.0
+2.1
N.D.
-2.6
stress
R2A with Vancomycin 0.009 mM
-3.4
-0.1
+2.3
N.D.
-2.1
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