Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu8117 and Atu0245 are separated by 96 nucleotidesAtu0245 and Atu0246 are separated by 17 nucleotidesAtu0246 and Atu0247 are separated by 14 nucleotidesAtu0247 and Atu0248 are separated by 137 nucleotides Atu8117: Atu8117 - hypothetical protein, at 243,482 to 243,883 Atu8117 Atu0245: Atu0245 - transcriptional regulator, at 243,980 to 244,561 Atu0245 Atu0246: Atu0246 - acetyltransferase, at 244,579 to 245,097 Atu0246 Atu0247: Atu0247 - hypothetical protein, at 245,112 to 246,185 Atu0247 Atu0248: Atu0248 - transcriptional regulator, AraC family, at 246,323 to 247,420 Atu0248
Group Condition Atu8117 Atu0245 Atu0246 Atu0247 Atu0248
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.2 +0.1 -0.4 -0.2 -0.3
phage AgroPhage_F03 -0.8 -0.4 -0.1 -0.1 -0.2
phage AgroPhage_B07 -1.1 -0.5 -0.0 -0.1 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -1.0 +0.0 -0.1 -0.2 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.8 -0.2 -0.1 +0.0 -0.5
phage AgroPhage_H04 -1.0 -0.3 -0.2 +0.1 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -1.0 -0.2 +0.0 +0.1 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.0 -0.3 +0.1 +0.1 -0.3
phage AgroPhage_E04 -0.7 -0.9 +0.1 +0.1 +0.0
lb_sorghum btx 430 LB_Sorghum Btx 430 -1.0 +0.1 -0.2 +0.0 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.8 -0.3 +0.1 +0.0 -0.3
lb_tobacco_leaf LB_Tobacco_Leaf -0.7 -0.3 -0.2 +0.2 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.4 +0.3 -0.1 -0.0 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -0.0 +0.1 +0.1 -0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -0.0 +0.1 +0.4 -0.8
lb_sorghum ss 20 LB_Sorghum SS 20 -0.9 -0.1 -0.2 +0.2 -0.1
phage AgroPhage_C10 -0.8 +0.5 -0.3 -0.4 +0.0
lb_sorghum x50 665 LB_Sorghum X50 665 -0.7 +0.3 -0.2 +0.1 -0.2
phage AgroPhage_B01 -0.9 +0.2 -0.0 +0.2 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 -1.0 +0.2 +0.2 -0.1
nitrogen source DL-2-Aminobutyric (N) -0.2 +0.1 -0.6 +0.0 +0.5
phage AgroPhage_E10 -0.4 +0.5 -0.4 +0.1 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 +0.6 +0.4 +0.1 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -0.3 +0.1 +0.7 +0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 -0.4 -0.1 +0.5 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +1.0 +0.4 -0.0 -0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.9 +0.6 -0.4 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.3 +0.7 -0.1 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.3 +0.7 +0.4 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 +1.3 +0.3 +0.4 +0.2
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