Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0223 and Atu0224 are separated by 101 nucleotidesAtu0224 and Atu0225 are separated by 70 nucleotidesAtu0225 and Atu0226 are separated by 118 nucleotidesAtu0226 and Atu0227 are separated by 186 nucleotides Atu0223: Atu0223 - components of type IV pilus, prepilin peptidase, at 229,013 to 229,525 Atu0223 Atu0224: Atu0224 - components of type IV pilus, pilin subunit, at 229,627 to 229,818 Atu0224 Atu0225: Atu0225 - hypothetical protein, at 229,889 to 230,143 Atu0225 Atu0226: Atu0226 - PilQ, at 230,262 to 230,645 Atu0226 Atu0227: Atu0227 - tRNA-Leu, at 230,832 to 230,918 Atu0227
Group Condition Atu0223 Atu0224 Atu0225 Atu0226 Atu0227
phage AgroPhage_E04 +0.2 -0.6 -3.9 -0.0 N.D.
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.5 -4.6 -0.1 N.D.
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 -4.6 -0.1 N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +1.0 -4.6 -0.2 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.1 -2.6 -0.4 N.D.
stress R2A with Tetracycline 0.002 mM +0.0 +0.2 -3.4 +0.0 N.D.
lb_cucumber_cotlyden LB_cucumber_cotlyden -0.0 +0.0 -2.8 -0.1 N.D.
stress R2A with vanadium chloride 0.08 mM -0.3 +0.2 -2.6 +0.1 N.D.
carbon source Cellotetraose (C) -0.1 +0.2 -2.6 -0.1 N.D.
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.0 -2.9 +0.0 N.D.
phage AgroPhage_B01 +0.1 -0.5 -1.8 -0.2 N.D.
Atjh2 +0.1 +0.2 -2.8 +0.2 N.D.
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.1 -2.8 +0.2 N.D.
lb_sorghum ss 20 LB_Sorghum SS 20 +0.1 +0.0 -2.3 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.2 -2.5 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 +0.1 -1.9 -0.1 N.D.
stress R2A with arsenate 50 mM -0.3 +0.1 -2.0 +0.1 N.D.
stress R2A with Trimethoprim 2.5 mM -0.2 +0.1 -1.9 +0.1 N.D.
lb_tomato_leaf LB_Tomato_Leaf +0.1 +0.1 -2.1 +0.1 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.0 -2.0 -0.1 N.D.
nitrogen source D-Glucosamine Hydrochloride (N) +0.1 +0.2 -2.0 +0.0 N.D.
nitrogen source DL-2-Aminobutyric (N) +0.2 +0.1 -2.7 +0.7 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.7 -1.8 -0.1 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 -0.2 -1.6 -0.1 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.6 -2.0 +0.6 N.D.
stress R2A with Vancomycin 0.009 mM +0.3 +0.4 -1.6 +1.2 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.2 +1.7 -0.3 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.9 +1.4 -0.2 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.2 +2.0 +0.2 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.9 -0.4 +2.1 +0.1 N.D.
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